wc-2

Ncra_wc-2       MSHGQPPPGSSMYGFGAMGMGSGMGSGMGSGMGTGMGTGMGTGMSASQMTSDPQDMMSLLDTSVFPGFDGMSMSLDVGDS-MSNPFTPVSVPPPLPAGNAGPSHVGVCGGHGAPDQLFSPDDLIATSMSS  129    KRTAP 
Asub_wc-2       ---------------------------------------MAGGVSASDMLDPSANLMSDLQDQIN----MLPMDLDLNDPSLDVSLSNVPFADPSAFGNNQNSMSLAAQTLHQHDDGQ------GNHMSG  81     PAS_11 
Anam_wc-2       -------------------------------------------------------------------------------------------------------MSFAAPSHHQHDDGQS-----QSNMSG  22    
Apul_wc-2       -------------------------MSYLSSVDGSLPQNMAGGVSASDMLDPSANLMSDLQDQIN----MLPMDLDLNDPNLDVSLSNVPFADPSAFGNNPNSMSLAPPNHQQHDDGQPH----ANNMSA  97    
Amel_wc-2       --------------------------------------------------------------------------------------------------NNLNSMSFAAQSQHHHDDGQS-----QSNMSG  27    
                                                                                                                           .       *:         . **

Ncra_wc-2       AGPMIATPTTTTSGPSGGPSSGGGSTLTEFTKRRNWPAKVVEELQDWEHILDANGRIKHVSPSVEPLTGYKPPEIIDLFLRDLIHPDDVGVFTAELNEAIATGSQLRLFYRFRKKDGNWTIFETVGHAHI  259    PAS  PAS_4  PAS_9  PAS_3 
Asub_wc-2       IG---AGPLPTGFG--MGPPSNGGNTLTEFTKRRNWSQRVIEELRDFLHILTPDGRILYVSPSAKTLTGYEPRYLVGKFIGEFVHPEDSGIFMREFNESIASGNPLRFFYRFKREDGTYIIFECDGHPHI  206    PAS  PAS_4  PAS_9 
Anam_wc-2       IG---AGPLPTGFG--MGPPSNAGNTLTEFTKRRNWSQRVIEELRDFLHILTPDGRILYVSPSAKTLTGYEPRYLVGKFIGEFVHPEDSGIFMREFNESIASGNPLRFFYRFKREDGTYIIFECDGHPHI  147    PAS  PAS_4  PAS_9 
Apul_wc-2       IG---AGPLPTGFG--MGPPSNGGNTLTEFTKRRNWSQRVIEELRDFLHILTPDGRILYVSPSAKTLTGYEPRYLVGKFIGEFVHPEDSGIFMREFNESIASGNPLRFFYRFKREDGTYIIFECDGHPHI  222    PAS  PAS_4  PAS_9 
Amel_wc-2       IG---AGPLPTGFG--MGPPSNGGNTLTEFTKRRNWSQRVIEELRDFLHILTPDGRILYVSPSAKTLTGYEPRYLVGKFIGEFVHPEDSGIFMREFNESIASGNPLRFFYRFKREDGTYIIFECDGHPHI  152    PAS  PAS_4  PAS_9 
                . *   * * .*  *   **.*..*.***********. :*:***:*: * * .:*** :****.:.****:*  ::. *: :::**:* *:*  *:**:**:*. **:* **:::**.: ***  **.*

Ncra_wc-2       AAAKFAP--------NPQNQSPFCQAVFMMARPYPTKNAGLLDSFLEHKIENERLKRRIAELRREEQEEQEESHRTWRMSQEGRSDVTPSDDTATQMGMTPFYIPMNAQADVMMPPPSQPASSLNIALTR  381    PAS_3  PAS_11  PAS  PAS_9 
Asub_wc-2       SSEQSAYGHMSGSGQGAMSAAGLCRGFFMMARPYPTKNAALLDSFLEHKIENERLKKRIEELKREEVEENQVQERQWQEQSRRDTSEAGRVEGSSEHSKTPNYQG--------MPPPAKPPIS-NTALTR  327    PAS_9  PAS_4  PAS_3 
Anam_wc-2       SSDQGGYGHMSGSGQGAMSASGLCRGFFMMARPYPTKNAALLDSFLEHKMENERLKKRIEELKREEVEENQQQERQWQEQSRRDPSEAGRVEGSSEHSKTPNYQG--------MPPPAKPPIS-NTALTR  268    PAS_9  PAS_4  PAS_3 
Apul_wc-2       SSDQGAYGHMSGSGQGAMSASGLCRGFFMMARPYPTKNAALLDSFLEHKIENERLKKRIEELKREEAEENQVQERQWQDQSRRDPSEAGRVDGSSEHGKTPNYQG--------MPPPAKPPIS-NTALTR  343    PAS_9  PAS_4  PAS_3  PAS 
Amel_wc-2       SSDQGAYGHMSGSGQGAMSASGLCRGFFMMARPYPTKNAALLDSFLEHKIENERLKKRIEELKREEVEENQVQERQWQEQSRRDPSEAGRMDGSSEHSKTPNYQG--------MPPPAKPPIS-NTALTR  273    PAS_9  PAS_4  PAS_3  PAS 
                *:: : .         .. . : :*:..************ *********:******:** **:*** **:: ..* *: ...  .. :   : ::: .  * *          ****::*. * * ***

Ncra_wc-2       ENLEG-IAGSRPDSIREKMLRYEG-NHADTIEMLTGLKYQEGERSHGITTGNASPTLIKGDAGIAIPLDRD-PRTGEKKKKIKVAEEYVCTDCGTLDSPEWRKGPSGPKTLCNACGLRWAKKEKKKNANN  508    GATA 
Asub_wc-2       QNLDSALSAQQPDSIADKMSRYEGSNHLETIEMLTGLRYRDGERSHGISTGDTSPALIRGDAGIAILLDRDRDGTKEKKKKLKVAEEYVCADCGTLDSPEWRKGPKGPKTLCNACGLRWAKKEKKRAVGD  457    PAS_9  GATA 
Anam_wc-2       QNLDSALSAQQPDSIADKMSRYEGSNHLETIEMLTGLRYRDGERSHGISTGDTSPALIRGDAGIAILLDRDRDGTKEKKKKLKVAEEYVCADCGTLDSPEWRKGPKGPKTLCNACGLRWAKKEKKRAVGD  398    PAS_9  GATA  PAS_11 
Apul_wc-2       QNLDSALSAQQPDSIADKMSRYEGSNHLETIEMLTGLRYRDGERSHGISTGDTSPALIRGDAGIAILLDRDRDGNKEKKKKLKVAEEYVCADCGTLDSPEWRKGPKGPKTLCNACGLRWAKKEKKKAVGD  473    PAS_9  GATA 
Amel_wc-2       QNLDSALSAQQPDSIADKMSRYEGSNHLETIEMLTGLRYRDGERSHGISTGDTSPALIRGDAGIAILLDRDRDGTKEKKKKLKVAEEYVCADCGTLDSPEWRKGPKGPKTLCNACGLRWAKKEKKKAVGD  403    PAS_9  GATA 
                *:**:. ::..:**** :** **** ** : *******:*::*******:**::**:**:******* ****   . *****:******* :**************.*******************: ..

Ncra_wc-2       N--NNGGGIGGHNDIHTPMGDHMG--  530   
Asub_wc-2       SGANSNAGMTPGGVPSLLHKDSSGSN  483   
Anam_wc-2       SGTNSNAGMTPGGVPSLLHKDSSGSN  424    PAS_11 
Apul_wc-2       SGANSNAGMTPGGVPSLLHKDSSGSN  499   
Amel_wc-2       SGTNSNAG------------------  411   
                :.  *...*                 

Input files: MFA/Ncra.CLOCK.v02.Aure.wc-2.aln (alignment), ALN//Ncra.CLOCK.v02.Aure.wc-2.dom.rgns (regions: exons, domains, low-complexity, etc)

5 sequences, alignment length = 650
sequence lengths:
  530  Ncra_wc-2
  483  Asub_wc-2
  424  Anam_wc-2
  499  Apul_wc-2
  411  Amel_wc-2

#domain Ncra_wc-2Asub_wc-2Anam_wc-2Apul_wc-2Amel_wc-2
1GATA1  467..502
1  416..451
1  357..392
1  432..467
1  362..397
2KRTAP1  0..68
0000
3PAS1  166..260
2  296..341
1  112..215
1  53..155
2  191..238
1  128..231
2  265..313
1  58..161
2  201..245
4PAS_111  173..277
1  54..78
2  120..213
1  61..151
2  375..403
1  136..227
1  66..157
5PAS_31  185..262
1  132..218
1  73..160
1  148..235
1  78..165
6PAS_41  169..257
1  116..215
1  57..157
2  180..245
1  132..232
1  62..162
7PAS_91  177..256
2  297..339
1  120..214
2  250..297
3  314..374
1  61..155
2  189..234
3  256..316
1  136..231
2  331..390
1  66..161
2  196..238
3  258..321

ARC.colors file was not found, using default colors.

Alignment Regions Colorize, ARC v061