ve-1
Ncra_ve-1 MGAQVIAAASNGLCHDDEPIASVKSRITRSGRKLWYSLRVVQEPLRARACGSGPK--SSADRRPVDPPPVVELRIFEGESFEMAQERDVTFQYNANFFLYATLEHARVMAQGRLQTPSANTPPVLTGMPV 128 Velvet
Asub_ve-1 MEPRIIAVPN-------ETIASFS-RTTCDGRHLLYKLKVLQQPERARACGSGAK--SSADRRPVDPPPIVELRIYDGE---ESKDNDITFAMNANYFLFATLEQARPIAQGRVPNNDPARLTVLTGTPV 117 Velvet
Anam_ve-1 MEPRVISVPN-------ETVASFS-RTTCDGRHLLYKLKVLQQPERARACGSGAK--SSADRRPVDPPPIVELRIFDGE---EHKDNDITFAMNANYFLFATLEQARPIAQGRVPN-DPARLTVLTGTPV 116 Velvet
Apul_ve-1 MESRVIPVPN-------ETVASFS-RTTCDGRLLIYKLKVLQQPERARACGSGAKCASSADRRPVDPPPIVELRIYDGE---EKDSNDVTFGMNANYFLFATLEQARPIAQGRVPNNDPARLTVLTGTPV 119 Velvet
Amel_ve-1 MEPRVISVPN-------ETVASFS-RTTCDGRHLLYKLKVLQQPERARACGSGAK--SSADRRPVDPPPIVELRIYDGE---EHKENDITFAMNANYFLFATLEQARPIAQGRVPNNDPARLTVLTGTPV 117 Velvet
* .::*.... *.:**.. * * .** * *.*:*:*:* ********.* ** *********:*****::** ...*:** ***:**:****:** :****: . .. .**** *
Ncra_ve-1 SGMAYLDRPKLAGYFLFPDLSVRHEGRYKLTFNLYEETKEDKDKDPEEPNAPPDGSPGS--FDFRMDIKSHDFVVYSAKKFPGLTESTPLSRTVAEQGCRVRIRRDVRMRRRD-GKGNSGGND---YENG 252 Velvet
Asub_ve-1 AGMVYLDRPDQAGYFIFPDLSVRHEGKYRLGFSLYEELKDPKDADQLDEAAAAAAAQGEAQITHRLEVKSQPFTVYSAKKFPGLASSTQLSRTVADQGCRVRIRREVRMRRREKGKDYDGYSDRGRHSAT 247 Velvet
Anam_ve-1 AGMVYLDRPDQAGYFIFPDLSVRHEGKYRLGFSLYEELKDPKDADQLDEAAAAAAAQGEAQITHRLEVKSQPFTVYSAKKFPGLASSTQLSRTVADQGCRVRIRREVRMRRREKGKDFDGYSDRGRHSAT 246 Velvet
Apul_ve-1 AGMVYLDRPSQAGYFIFPDLSVRHEGKYRLGFSLYEELKDPKDADQADEAAAAAAAQGEAQITHRLEVKSQPFTVFSAKKFPGLASSTQLSRTVADQGCRVRIRREVRMRRREKGKDYDGYSD------- 242 Velvet
Amel_ve-1 AGMVYLDRPDQAGYFIFPDLSVRHEGKYRLGFSLYEELKDPKDADQLDEAAAAAAAQGEAQITHRLEVKSQPFTVYSAKKFPGLASSTQLSRTVADQGCRVRIRREVRMRRREKGKDYDGYSDRGRHSAT 247 Velvet
*:**.*****. ****:**********:*:* *.**** *: ** * : *.. .: *. : .*:::**: *.*:********:.** ******:*********:*** **: **. .* .*
Ncra_ve-1 EEEYRRARRTATPDTAKQEAYRQRSMSGSTERTPYSSISDPQRRPSMADYP-PQYAAQTPTSGGHLGFLGGNTHHQYPAQPPPQSFAQPHSVPPSPVYPTSQRAP--------YQHQPSSYPPPPPPHQP 373
Asub_ve-1 PDAYQSHMAVAHPGAEAADRERSASIVSHASLAAAPASRRPSGHEMIQAYPQPSYAPQALI--QHP-----APAQPQYSQPPAHQYAPQYAQQHPQMQPPAMQPPQPQMHYGHYQYPQAATP---APAQH 367
Anam_ve-1 PDVYQSHLAGAHPGAEAADRERSASIASHASLAAAPSSRRPSGHDMCQVYPQPAYPPQAVA--QHPGAQPTAPAQPQYSQTPTHQYAAPYAQQQAQMQPPPMQPPQPQMHYGQYQYTQAAAP-APAHQHA 373
Apul_ve-1 ---------------------------------------------------------------------------------------------------------------------------------- 242
Amel_ve-1 PDAYQSHMAGAHPGADAADRERSASIASHVSLAAAPSSRRPSGHDVCQTYPQPPYPPQVST--QHAAVQPAPPAQTQYSQAPAHQYAAPYVQPQAQLQPPSMQPPQTQMHYGQYQYPQAAAPPAPTHQQS 375
Ncra_ve-1 IFQSEHHTSRTYAPINPASRHDSIHQSTKQYTLPPLSEAVS-------PTQPHHQHP---SIAPHRLPVTALPPLQVDRFSSASHN-------QHPMVSPSNMAAPPYPRAYSVSNSGGLTSAGGYNQLP 486
Asub_ve-1 AYYGYGHPA-QHAQYEEPAAARTMSVDYSHGAPAPVPADLRRHSMIQTSSYPHNGQPQHQAYSSHYQKPASYQTQQTPKMRQMSQTSASGASAIPPHVLPPINTSLVPQPKLEVSPPSSAVSQSHYYDMA 496 Velvet
Anam_ve-1 AYYAYGHPAQQHAQYEEPAVARTMSVDYSHGAPAPVPADVRRHSMIQTPSYPHSSQP--QAYSSQYHQPA-YTPQQTPKMRQMSQVSAAGASAVAPHVLPPINTSLVAQTKLEISPPSSAVSQSHYYDMA 500
Apul_ve-1 ---------------------------------------------------------------------------------------------------------------------------------- 242
Amel_ve-1 AYYGYGHPAPQHAQYEEPAVARTMSVDYPHGAPAPVHADPRRHSMIQPSSYTHNSQP--QTYSNQYQHPG-YTPQQTPKMRQMSQASAASASAIAPHVLPPINTSLVPQ-KLETSPPSSAVSQSHYYDMA 501
Ncra_ve-1 PPPPPPPQVAGSKRAHDQTFRADPEMRRYQDGARERES------VDD------KEPPLCTFKYRRADGSVECKQADIGGY 554
Asub_ve-1 RTSETG-QVNG-KRSYDRVFDTRHLNGPLRQGARPSVSGYGHLVADDGNDSELAELESLKMSYRRADGREIARPLPPSHD 574
Anam_ve-1 RSSENG-QVNG-KRSYDRVFDTRHLNGPLRQGARPSVSGYGHIVADDGNDSEVAELESLKMSYRRADGREIARPLPPSHD 578
Apul_ve-1 -------------------------------------------------------------------------------- 242
Amel_ve-1 RASENG-QMNG-KRSYDRVFDTRHLNGPLRQGARPSVSGYGHLVADDGNDSELAELESLKMSYRRADGREIARPLPPSHN 579
Input files: MFA/Ncra.CLOCK.v02.Aure.ve-1.aln (alignment), ALN//Ncra.CLOCK.v02.Aure.ve-1.dom.rgns (regions: exons, domains, low-complexity, etc)
5 sequences, alignment length = 650
sequence lengths:
554 Ncra_ve-1
574 Asub_ve-1
578 Anam_ve-1
242 Apul_ve-1
579 Amel_ve-1
| # | domain |
Ncra_ve-1 | Asub_ve-1 | Anam_ve-1 | Apul_ve-1 | Amel_ve-1 |
|---|
| 1 | Velvet | 1 32..234
| 1 24..225
2 407..469
| 1 24..224
| 1 25..227
| 1 24..225
|
| |
ARC.colors file was not found, using default colors.
Alignment Regions Colorize, ARC v061