tbg

Ncra_tbg        MP--REIITIQAGQCGNSIGSQFWQQLCLEHGISQDGTIEDFATEGGDRKDVFFYQSDDTRYIPRSILIDLEPRVINTIQTGPYRNIYNPENFYVGKSGLGAGNNWGDGYQTGEQVHEEIMEMIEREADG  128    Misat_Tub_SegII  Tubulin 
Asub_tbg        MPQRSKIITLQAGQCGNSVGSQFWQQLCQEHGINRDGNLEDFATEGGDRKDVFFYQSDDTRYIPRAILMDLEPRVINGIQTGPYKNIYNPENFYIHSGGTGAGNNWAAGYSMGETVQEEVLDMIDREADG  130    Misat_Tub_SegII  Tubulin 
Anam_tbg        ----REIITLQAGQCGNSVGSQFWQQLCQEHGINRDGNLEDFATEGGDRKDVFFYQSDDTRYIPRAILMDLEPRVINGIQTGPYKNIYNPENFYIHSGGTGAGNNWAAGYSMGETVQEEVLDMIDREADG  126    Tubulin 
Apul_tbg        MP--REIITLQAGQCGNSVGSQFWQQLCQEHGINRDGNLEDFATEGGDRKDVFFYQSDDTRYIPRAILMDLEPRVINGIQTGPYKNIYNPENFYIHSGGTGAGNNWAAGYSMGETVQEEVLDMIDREADG  128    Misat_Tub_SegII  Tubulin 
Amel_tbg        MP--REIITLQAGQCGNSVGSQFWQQLCQEHGINRDGNLEDFATEGGDRKDVFFYQSDDTRYIPRAILMDLEPRVLNGIQTGPYKNIYNPENFYIHSGGTGAGNNWAAGYSMGETVQEEVLDMIDREADG  128    Misat_Tub_SegII  Tubulin 
                      :***:********:********* ****.:**.:******************** *****:**:******:* ******:*********: ..* ******. **. ** *:** ::**:****

Ncra_tbg        SDSLEGFMMLHSIAGGTGSGLGSFLLERLNDRFPKKIIQTYSVFPDTTSAGDVVVHPYNSLLAMRRLTQNADSVVVLDNGALSHIAADRLHVQEPSFQQTNQLVSTVMSASTTTLRYPGYMHNDLVSILA  258    Tubulin  Tubulin_C 
Asub_tbg        SDSLEGFMLLHSIAGGTGSGLGSYLLERLNDRFPKKLIQTYSVFPDTLQSGDVVVQPYNSLLSMKRLTQQADSVIVLDNGALSRIAADTLHVQEPSFQQTNQLVSTVMSASTTTLRYPGYMHNDLVGIVA  260    Tubulin  Tubulin_C 
Anam_tbg        SDSLEGFMLLHSIAGGTGSGLGSYLLERLNDRFPKKLIQTYSVFPDTVQSGDVVVQPYNSLLSMKRLTQQADSVIVLDNGALSRIAADTLHVQEPSFQQTNQLVSTVMSASTTTLRYPGYMHNDLVGIVA  256    Tubulin  Tubulin_C 
Apul_tbg        SDSLEGFMLLHSIAGGTGSGLGSYLLERLNDRFPKKLIQTYSVFPDTVQSGDVVVQPYNSLLSMKRLTQQADSVIVLDNGALSRIAADTLHVQEPSFQQTNQLVSTVMSASTTTLRYPGYMHNDLVGIVA  258    Tubulin  Tubulin_C 
Amel_tbg        SDSLEGFMLLHSIAGGTGSGLGSYLLERLNDRFPKKLIQTYSVFPDTLQSGDVVVQPYNSLLSMKRLTQHADSVIVLDNGALSRIAADTLHVQAPSFQQTNQLVSTVMSASTTTLRYPGYMHNDLVGIVA  258    Tubulin  Tubulin_C 
                *********:**************:************:********** . *****:******:*:****:****:********:**** **** *************** ****************.*:

Ncra_tbg        SLIPTPRCHFLMTSYTPFTGDQVEQAKTVRKTTVLDVMRRLLQPKNRMVSTVPGKKSCYISILNVIQGDVDPTDVHKSLLRIRERRLATFIPWGPASIQVALTKRSPYVTMAH--RVSGLMLANHTSIAT  386    Tubulin_C 
Asub_tbg        SLIPTPRCHFLQTSYTPFTGENVEAAKTVRRTTVLEVMRRLLQPKNRMVSSNPSKNSCYISILNIIMGEADPTDVHKSLLRIRERRLATFIPWGPASIQVALTRTSPYTTTSYTPRVSGLMLANHTGIAT  390    Tubulin_C 
Anam_tbg        SLIPTPRCHFLQTSYTPFTGENVEAAKTVRRTTVLEVMRRLLQPKNRMVSSNPSKNSCYISILNIIMGEADPTDVHKSLLRIRERRLATFIPWGPASIQVALTRTSPYTTGPHTPRVSGLMLANHTGIAT  386    Tubulin_C 
Apul_tbg        SLIPTPRCHFLQTSYTPFTGENVEAAKTVRRTTVLEVMRRLLQPKNRMVSSNPGKNSCYISILNIIMGEADPTDVHKSLLRIRERRLATFIPWGPASIQVALTRTSPYTTTAHTPRVSGLMLANHTGIAT  388    Tubulin_C 
Amel_tbg        SLIPTPRCHFLQTSYTPFTGENVEAAKTVRRTTVLEVMRRLLQPKNRMVSSNPSKNSCYISILNIIMGEADPTDVHKSLLRIRERRLATFIPWGPASIQVALTRTSPYTTGPHTPRVSGLMLANHTGIST  388    Tubulin_C 
                ************ ********::** *****:****:*** **********: *.*:********:* *:.***************************** ***: ***.* .:  ***********.*:

Ncra_tbg        LFKRIVRQYDGMRKRNAFMEAYKKTAPFSENLNEFDEAREVVMDLIADYEAAEDANYLNPELGENASADTDKRMA---  461    Tubulin_C 
Asub_tbg        LFKRIVFQYDRLRKRNAFLEQYKREDAFRDGLGEFDDAREVVMDLVREYEDAEKETYLSGPQGPVESEEKDGRTDGIR  468    Tubulin_C  Misat_Tub_SegII 
Anam_tbg        LFKRIVFQYDRLRKRNAFLEQYKREDAFRDGLGEFDDAREVVMDLVREYEDAEKETYLSGPTAAPESEEKDGRTDGIR  464    Tubulin_C  Misat_Tub_SegII 
Apul_tbg        LFKRIVFQYDRLRKRNAFLEQYKREDAFRDGLGEFDDAREVVMDLVREYEDAEKETYLSGPTGPVESEEKDGRTDGIR  466    Tubulin_C 
Amel_tbg        LFKRIVFHYDRLRKRNAFLEQYKREDIFRDGLGEFDDAREVVMDLVREYEDAEKETYLSGPTAAPESEDRDGRTDGIR  466    Tubulin_C 
                ******* :** :******:* **:   *  .*.***:********: :** **. .**.   .   * : * *    

Input files: MFA/Ncra.CLOCK.v02.Aure.tbg.aln (alignment), ALN//Ncra.CLOCK.v02.Aure.tbg.dom.rgns (regions: exons, domains, low-complexity, etc)

5 sequences, alignment length = 520
sequence lengths:
  461  Ncra_tbg
  468  Asub_tbg
  464  Anam_tbg
  466  Apul_tbg
  466  Amel_tbg

#domain Ncra_tbgAsub_tbgAnam_tbgApul_tbgAmel_tbg
1Misat_Tub_SegII1  2..119
1  4..104
2  357..415
3  394..461
1  0..100
2  396..459
1  2..102
1  2..98
2Tubulin1  3..226
1  5..228
1  1..224
1  3..226
1  3..226
3Tubulin_C1  212..243
2  263..392
1  215..245
2  265..395
1  211..241
2  261..391
1  213..243
2  263..393
1  214..243
2  263..393

ARC.colors file was not found, using default colors.

Alignment Regions Colorize, ARC v061