sub-1
Ncra_sub-1 ------------------MEAGDSAARQSGIPTATTTREHFDPARPYNNRNSRGGTAMATATLINPSSQYHSHSFSHNPYHPSSSASIPGMISPVDSRRTS--DESENPHRQSLPSISEVISGTKPTSYP 110
Asub_sub-1 MNVESSDRQRQDWPQRQHSPVERLTNKQCRAALPPIKLLDIDKIKREEAEYQARGTTFNMAPSSVNSP---TIAYPSGPPPPYSRPSYPDARTSPEARRHSVEDSSKQGNKQSLPSIHEALGVEQRASYP 127
Anam_sub-1 -------------------------------------MLDFVKAKHEEADYQARGTNMSMAPSATNSP---TIAYPSGPPPPYSRPSYPDARLPSEMRRTSNEDPSNQANKQSLPSIHEALGVEQPASYS 90
Apul_sub-1 -------------------------------------MLDIDKIKREEAEYQARGTNMNMAPSAVNSP---TIPYPSGPPPPYSRPSYPDARTPPEARRPSQEDPSKQANKQSLPSIHEALGVEQSASYP 90
Amel_sub-1 --------------------------------------------------------------------------------------MAPNFQIEIESLPVDRSAGFHQKVVDGIEDLLLVLAEDGRVVYA 44
*. : . .: :.: .: :. . *
Ncra_sub-1 ----------PHAPTSLPPTQSLPSPFAPSGPPRSYDVDKHPSP---RALHPSSGFPRPDPLPAFSDPARPQLSSRPPPPPPLNTFPTHHQHPSPPVKLEQMEVDQRHAEASPLSAGYPHHPPGHP--AG 225
Asub_sub-1 PTAHRPYSSAPQSAYRAPATASAPAPASPVSARRSFAAMDPPPPPQPVVFTHGPRSPYAQPQHEISPRQMPEQQERQRSAYAPQPPVSR-PGQSPLAHQSQYPRSYPATGPSPSHERTASHPLSMPPVAP 256
Anam_sub-1 SATHRPYSSAPQPAYHAPVTA--PSPASPAPARRSFAAMDPPPPPQPTFFTHGPRSPHSQPHQEISPRQMPEHD-RQRSVYAPQP-IATHAGQSPMNHQSQHPRSYPAAA---SHERTASHPLSMPPVAP 213
Apul_sub-1 PAAHRPYSSAPQPAYHAPVTA--PAPPSPVSARRSFAAMEPPPPPQSAGFVHAPRSPYTQPHQDVSPRHMSEHQERQRSAYAPQPPPSLQPGQSPLAHQSQYPRSYSVAGPSPSHERTASHPLSMPPAAP 218
Amel_sub-1 S-------------------------------SKSYSHMQIKPEALFGRYISTYMNVDDIPVFLVQWKENMALGSTWRS---------HHRLRQGDDTYKPFESTFKPYTDKTINKGTGTR--------- 125
. :*: . . * .. . . . :
Ncra_sub-1 PHYAQTGRLPPGQLPLSAYP----VSPRHSGLGLPSPYDSQHRPPMYPEEQEYGHGYARSSEYKAAPERSLPDWSSYGEMMYMNKQIAHAGRTVYHFAEGYGAAARE-QQGQPLPSRLPTESEISVVIDS 350
Asub_sub-1 PP-AIQHPLPYGYAPAPAPV--QAPYPSHYAYPASASHSAATTSSIYQPSIVQPAPPQHSEPGRGPFGESVKRHLDMWDFGEALNEIAESSNYMLDFSRQCGARLHQSQRSEPAPGTLPQLQEIDHLMEK 383
Anam_sub-1 PPSAPQHAVPYGYAPAPVAVPAPAPYASHYAYPPPAPHSAAPTSSIYQPSITQPAPPQNSDPGRAPFGDSVKRHLDMWDFGEALNEIADSSSHMLEFSRQCGARLHQSQRSEPTPGNLPQLQEIDHLMEK 343
Apul_sub-1 PP-APHHPLPYGYAPAPAP----APYPSHYAYPPSAPHPAATTSSIYQPSITQPAPPQNSEPGRAPFGDSVKRHLDMWDFGEALNEIAESSSYMLDFSRQCGARLHQSQRSDPAPGTLPQLQEIDYLMEK 343
Amel_sub-1 -------------------------TSTKLCLMTSRPYQITSTS-LMDSFLEHYTTNIRLMNQLAQLKGEAEEFQESTTSTKMVDTTVQCATFKLEATTATATATVTATVTAKTTTPLKQVSNLALPP-- 227
. : . .: . : . . . . . .... . : .: . * .::
Ncra_sub-1 AVVAVENLKNLRHLIAQINSERSRENGGRKSGAED----DDVSMYGDGIGKHSSFNEVKKRRGRAAPPGRCHSCNRIDTPEWRRGPDGARTLCNACGLHYAKLERKR-----QLEQRSIRPKPTDDRN- 469 GATA
Asub_sub-1 SRRQLDCYAKMREFIIAQQTAYFQQAQEQQFRAQDGIKRDSVHQSEESKAGGFAGAEAKKRRGRAAPPGRCHSCNRAETPEWRRGPDGARTLCNACGLHYAKLTRKAGKNAAAISSSNLRPKTSEDAQN 512 GATA
Anam_sub-1 SRRQLDCYAKMREFVIAQQTAYFHQAQEQQSRAQEGMKRDSVHQSEESKAGGFAGAEAKKRRGRAAPPGRCHSCNRAETPEWRRGPDGARTLCNACGLHYAKLTRKAGKNAAAISSSNLRPKADEPQN- 471 GATA
Apul_sub-1 SRRQLDCYAKMREFIIAQQTAYFQQAQEQQFRAQDGIKRDSVHQTEESKAGGFAGAEAKKRRGRAAPPGRCHSCNRAETPEWRRGPDGARTLCNACGLHYAKLTRKAGKNAAAISSSNLRPKAPEDTPN 472 GATA
Amel_sub-1 TTLPESESGAPRKRSISESTTSTKPQIDSVVGDIGIEIATSRLQTMKETGAWTAKPRTKKRKQELCTEYLCKECGTTDSPEWRRGPLGSKTLCNACGLRWSKAQKEK-------EKESIAAQKTQ---- 345 GATA
: . *. .: : . . . : ..***: . .. *:.*. ::******* *: ********:::* :: .. .: .: :
Input files: MFA/Ncra.CLOCK.v02.Aure.sub-1.aln (alignment), ALN//Ncra.CLOCK.v02.Aure.sub-1.dom.rgns (regions: exons, domains, low-complexity, etc)
5 sequences, alignment length = 520
sequence lengths:
469 Ncra_sub-1
512 Asub_sub-1
471 Anam_sub-1
472 Apul_sub-1
345 Amel_sub-1
| # | domain |
Ncra_sub-1 | Asub_sub-1 | Anam_sub-1 | Apul_sub-1 | Amel_sub-1 |
|---|
| 1 | GATA | 1 416..451
| 1 453..488
| 1 413..448
| 1 413..448
| 1 297..332
|
| |
ARC.colors file was not found, using default colors.
Alignment Regions Colorize, ARC v061