rco-1

Ncra_rco-1      MSMYPHRPIAGAPIQNMGRLNELLDGIRMEFESQARQYETCQHDLATQLQELQVIREKVFQMEQHQMNVKQKYEDEIALLRRQLEARGGAPGNMNPPPQHPGQQQPPAIGLG-SNVFSAIMAG---QGGQ  126    Myosin_tail_1  Tup_N 
Asub_rco-1      ---------MAFPNP---------DVVFADYCLY--------DLVANQIQEMELVRSKIFQLEQTHMQMKQKYEEDISRLRRDLEARGGPSQSSHSGPSQP---PPPSIGHGPANLFQGIMAGATAQGGP  101    Tup_N 
Anam_rco-1      -MYNAHRGIAGAPAPPNSRLVELLEQVRAEFEAQGGRANEYEHQLANQIQEMELVRSKIFQLEQTHMQMKQKYEEDISRLRRDLEARGGPSQSSHTGPSQP---PPPSIGHGPANLFQGIMAGATAQGGP  126    Tup_N 
Apul_rco-1      -MYNAHRGIAGAPAPPNNRLVELLEQVRAEFEAQGGRANEYEHQLANQIQEMELVRSKIFQLEQTHMQMKQKYEEDISRLRRDLEARGGPSQSSHTGPSQP---PPPSIGHGPANLFQGIMAGATAQGGP  126    Tup_N 
Amel_rco-1      -MYNAHRGIAGAPAPPNNRLVELLEQVRAEFEAQGGRANEYEHQLANQIQEMELVRSKIFQLEQTHMQMKQKYEEDISRLRRDLEARGGPSQSSHTGPSQP---PPPSIGHGPANLFQGIMAG--AQGGP  124    Tup_N 
                           . *           : :  ::           . :*.*:**::::*.*: *:** :*::*****::*: ***:******.. . :. *.:*    **:** * :*:*.. ***   ***

Ncra_rco-1      ALVPPPPPPQQQEQPAHMPAPPGLQGPPPPPPPPSQQPPFQQQYQGPQGPGNFPPQPPQSTASPGPAGKRGIGRPPAGGPATPQINTPIPYNGGPAQSPQVPTHPTPDHT---RMAQHHQPPPPPPSQTN  253    Nbas_N 
Asub_rco-1      GLAPPPQDGPPQGVPAHIQGPPGLNPPPGPP----QHAPFGGYGQPPAGVNGYGPAPPQPTASPGPGKPRTNARGP-GIPGTPQQNNANPYPGSPAMARPTPPPALAQQQQALSLPQHNQYAQELGGSGN  226   
Anam_rco-1      GLAPPPQDGPPQGVPAHIQGPPGLNPPPGPP----QHAPFGGYGQPPAGVNGYGPAPPQPTASPGPGKPRTNARGPPGIPGTPQQNNANPYPGSPAMARPTPPPALAQQQQALSLPQHQQYVQELGGSGN  252   
Apul_rco-1      GLAPPPSDGPPQGVPAHLQGPPGLNPPPGPP----QHAPFGGYGQPPAGVNGYGPAPPQPTASPGPGKPRTNARGPPGIPGTPQQNNANPYPGSPAMARPTPPPALAQQQQALSLPQHQQYAQELGGSGN  252   
Amel_rco-1      GLAPPPQDGPPQGVPAHIQGPPGLNSPPGPP----QHAPFGGYGQPPAGVNGYGPAPPQPTASPGPGKPRTNARGPPGIPGTPQQNNANPYPGSPAMARPTPPPALAQQQQALSLPQHQQYTQELGGSGN  250   
                 .*.***     *  ***: .****: ** **    *:.**    * * * ..: * ***.******.  *  .* * * *.*** *.. ** *.** :  .*. . .::     :.**:*      .. 

Ncra_rco-1      ALSELDPDRLPNHIKKMKDDWWVIFNAAVPRVLDVELVHTLQHESVVCCVRFSMDGKYVATGCNRSAQIYDVETGEKLCILQDENIDLTGDLYIRSVCFSPDGKYLATGAEDKLIRVWDIQSRTIRNTFH  383    WD40  Nucleoporin_N  Nup160 
Asub_rco-1      QLVDLAVETLPGNLKREGEDWYAVFNPRVRRTLDVELVHNLAHQSVVCCVRFSRDGRFVATGCNRSAQIFDVESGQQVKHLQDTSLPQDGDLYIRSVCFSPDGQYLATGAEDKIIRIWEIAAGQIRHQFA  356    WD40  Nucleoporin_N 
Anam_rco-1      QLVDLAVETLPSNLKREGEDWYAVFNPRVRRTLDVELVHNLAHQSVVCCVRFSRDGRFVATGCNRSAQIFDVESGQQVKHLQDTSLPQDGDLYIRSVCFSPDGQYLATGAEDKIIRIWEIAAGQIRHSFA  382    WD40  Nucleoporin_N 
Apul_rco-1      QLVDLAVETLPGNLKREGEDWYAVFNPRVRRTLDVELVHNLAHQSVVCCVRFSRDGRFVATGCNRSAQIFDVESGQQVKHLQDTSLPQDGDLYIRSVCFSPDGQYLATGAEDKIIRIWEIAAGQIRHQFA  382    WD40  Nucleoporin_N 
Amel_rco-1      QLVDLAVETLPSNLKREGEDWYAVFNPRVRRTLDVELVHNLAHQSVVCCVRFSRDGRFVATGCNRSAQIFDVESGQQVKHLQDTSLPQDGDLYIRSVCFSPDGQYLATGAEDKIIRIWEIAAGQIRHQFA  380    WD40  Nucleoporin_N 
                * * :*  : **.::*:  :**:.:**. * *.******* * *:********* **::***********:***:*:::  *** .:   ********** ***:*********:**:*:* :  **: *

Ncra_rco-1      GHEQDIYSLDFSRDGRTIASGSGDRTVRLWDIETGQNTSVLSIEDGVTTVAISPDKQFVAAGSLDKSVRVWDMR-GYLAERLEGPDG---HKDSVYSVAFSPDGRNLVSGSLDKTIKMWELSAPRGIPSS  509    WD40  Nup160 
Asub_rco-1      GHEQDIYSLDYSSDGRYIASGSGDRTVRVWDIPNNQCVLCLTIEDGVTTVAISPDNRFLAAGSLDKSVRVWELASGNLLERLEEAGGNPGHKDSVYSVAFSPTSRELVSGSLDRTIRMWELQSHYPGNQN  486    WD40  Nup160  Nucleoporin_N 
Anam_rco-1      GHEQDIYSLDYSSDGRYIASGSGDRTVRVWDIPNNQCVLCLTIEDGVTTVAISPDNRFLAAGSLDKSVRVWELASGNLLERLEEAGGNPGHKDSVYSVAFSPTSRELVSGSLDRTIRMWELQSHYPNTQN  512    WD40  Nup160 
Apul_rco-1      GHEQDIYSLDYSSDGRYIASGSGDRTVRVWDIPNNQCVLCLTIEDGVTTVAISPDNRFLAAGSLDKSVRVWELASGNLLERLEEAGGNPGHKDSVYSVAFSPTSRELVSGSLDRTIRMWELQSHYGN-QP  511    WD40  Nup160 
Amel_rco-1      GHEQDIYSLDYSSDGRYIASGSGDRTVRVWDIPNNQCVLCLTIEDGVTTVAISPDNRFLAAGSLDKSVRVWELASGNLLERLEEAGGNPGHKDSVYSVAFSPGSRELVSGSLDRTIRMWELQPHYPGNQN  510    WD40  Nup160  Nucleoporin_N 
                 **********:* *** ***********: ** ..* .  *:*************::*:************::  * * **** ..*   ************ .*:*******:**:****..     .

Ncra_rco-1      AP---PKGGRCIKTFEGHRDFVLSVALTPDSQWVLSGSKDRGVQFWDPRTGHTQLMLQGHKNSVISVAPSPVTGPNGVGYFATGSGDMRARIWSYS--RI------  604    Nup160  WD40 
Asub_rco-1      MPPRNPRGGKCIRTFEGHKDFVLSVALSPDGEWVLSGSKDRGVQFWNPQTGDAQLMLQGHKNSVISVAPSPVQG----GLFATGSGDMRARIWRFS--RYDPARG-  585    Nucleoporin_N  WD40 
Anam_rco-1      MPPRNPRGGKCIRTFEGHKDFVLSVALSPDGEWVLSGSKDRGVQFWNPQTGDAQLMLQGHKNSVISVAPSPVQG----GLFATGSGDMRARIWRFS--RYDPSRG-  611    Nup160  WD40  Nucleoporin_N 
Apul_rco-1      MPPRNPRGGKCIRTFEGHKDFVLSVALSPDGEWVLSGSKDRGVQFWNPQTGDAQLMLQGHKNSVISVAPSPVQG----GLFATGSGDMRARIWRFS--RYDPARG-  610    Nucleoporin_N  WD40 
Amel_rco-1      MPPRNPRGGKCIRTFEGHKDFVLSVALSPDGEWVLSGSKDRGVQFWNPQTGDAQLMLQGHKNSVISVAPSPVPG----GLFATGSGDMRARIWRFVPCCYNYMVRD  612    Nucleoporin_N  WD40 
                  *   *:**:**:*****: *******:**.:**************:*:**.:******************* *    * ************* :          

Input files: MFA/Ncra.CLOCK.v02.Aure.rco-1.aln (alignment), ALN//Ncra.CLOCK.v02.Aure.rco-1.dom.rgns (regions: exons, domains, low-complexity, etc)

5 sequences, alignment length = 650
sequence lengths:
  604  Ncra_rco-1
  585  Asub_rco-1
  611  Anam_rco-1
  610  Apul_rco-1
  612  Amel_rco-1

#domain Ncra_rco-1Asub_rco-1Anam_rco-1Apul_rco-1Amel_rco-1
1Myosin_tail_11  13..89
0000
2Nbas_N1  223..242
2  340..396
3  410..464
4  463..504
0000
3Nucleoporin_N1  338..390
2  376..458
3  459..510
4  475..573
1  261..430
2  389..489
3  501..577
1  287..456
2  415..515
3  527..604
1  288..456
2  416..514
3  526..602
1  297..454
2  413..514
3  517..607
4Nup1601  365..432
2  424..504
3  492..575
1  357..404
2  398..485
1  381..431
2  423..489
3  472..518
1  384..429
2  424..489
3  472..511
1  380..428
2  421..486
3  472..505
5Tup_N1  18..89
1  11..63
1  17..88
1  17..88
1  17..88
6WD401  288..323
2  339..371
3  375..413
4  418..454
5  464..498
6  514..552
7  556..599
1  261..296
2  314..344
3  348..386
4  391..427
5  442..475
6  494..532
7  536..575
1  287..322
2  340..370
3  374..412
4  417..453
5  468..501
6  520..558
7  562..601
1  287..322
2  340..370
3  374..412
4  417..453
5  468..501
6  519..557
7  561..600
1  285..320
2  338..368
3  372..410
4  415..451
5  466..499
6  518..556
7  560..599

ARC.colors file was not found, using default colors.

Alignment Regions Colorize, ARC v061