phy-2
Ncra_phy-2 ---MSQPIERVFPIRLSILESSAFLRNVSDADDLLSVVPVTQQLS-NQHLSPPSSDGSRCEPLPSATDRQANPQDSSSAASSYNYTYPSSFNKGNGGDDSLLSETFEYALLADGSHGVIQKARRAFTTCD 126 PAS_2
Asub_phy-2 MTDTAFTALQYLPMPVLVLSSEKTVVLANEALGRLLGIDLQQQTGPESGDSNEQEDVRGASDILGGIPMDNLGMDLLQNANPVWMRWADFLNTIKQDAVDASAQAETKSDGGDTTPTAENYD-AISLQSK 129
Anam_phy-2 ---------------------------MSLTQSRVSSLVSTDSVPITLSARRQSEDDGQPKPFAPLTTRSTASSDGISMP-----------------------------------KNLIRPSTPQSTKDD 68
Apul_phy-2 MSETAFAAMQYLPMPLLVLSSEKTVVLANEAMGRLLGIDLQLPAVDSAG-SNEQEDASSASDILGGVPMDSLGMDLLQNANPVWMRWVDFLNTIKQDAVDASAQSESKSDGGDITPTAESYD-TAGLQSK 128
Amel_phy-2 MTDTAFTALQYLPMPVLVLSSEKTVVLANEALGRLLGIDLQQTTPLDSAGMNEQEDVRSASDVLAGVPMDCLGMDLLQNANPVWMRWEDFLNTIKQDAIDASAQSEGRSDGGDLTPTAETYDGSAAVQSS 130 Response_reg
. : . : : ..* . . . * . .
Ncra_phy-2 EEPIHIPGAIQSYGMLVALKLVDERVAGPSRYLPRICSENSAFVCHYQPSELLSLDSFYQVMPNFQRHLFDVQLRHIRQGYDSTKKEQEPVVFAFSFSDPDGRLIPCWCAAHYLGGDTDLFICEFELQDY 256 PAS_2
Asub_phy-2 PVPLTRANLARTTVHDAAVDVVFSTNRDPITGLPRTKELNHDASGHIQSTVIITVWSADDVD--YYTLVFTSAAETQSSSSRSSHRTVARTHTTFSSGMGSGSSSSSSGRRTQHQHRTSLSGSPSVFAPS 257 Response_reg
Anam_phy-2 IQKPCPTNSIQSFGAAIGLERDADG-----KLLVFMASDNSEAIVGYSPDNLFALQNFVDLLD---PEETDTLLEHIASAHDRASYSNTLNVFDLSIRDHHGLVRALSCVIHAEISRPALILCEFVPQPA 190 HisKA
Apul_phy-2 PVPLTRANLARTTVHDAAVDVVFSTNRNPATGLPRSKEVNHDASGHIQSTVIITVWSADDTD--YYTLVFTSAAETQSSSSRSSHRTVARTHTTFSSGLGSGSSSSSSGRRTQHQHRTSLSGSPSVFAPS 256
Amel_phy-2 PVPLTRANLARTTVHDAAVDVVFSTNRNPITGLPRSKEVNHDASGHIQATVIITVWSADDAD--YYTLVFTSAAETQSSSSRSSHRTVARTHTTFSSGLGSGSSSSSSGRRTQHQHRTSLSGSPSVFAPS 258
. .. :: .:. . * . * .. :::: . : . .. : :* * . . * .
Ncra_phy-2 SMHPLATPAMSDPGNPIDTLGSDHLDFATACSIQSKVQPAFPNPELISKGFDPSTSSVEVIGMATKIQTQFSEAATVPDLLETIVSIVKEVTRFHRVMVYQFDRDYNGTVVAELMDPKASNDVYRGLHFP 386 GAF_3
Asub_phy-2 LLPTGPPSLTTSAAAPSLFSKSNRLKDALLNSLSDPAFAMWKDESFGIPNKAAVRMVYPDDEEGVTGVRDQRDFLSKYVLWKEDFSELLPMSEFPIMHLMTTEKRFSNRRVGMHHPRSGDKIIYD----V 383
Anam_phy-2 ASFARQSQRMHSRKTRTETR----------------------------PPLSRKGSASDTLNTMSRAHRTISVASTIETLLEGLVTSIKVATGHSNISVHRFDSHCHGRLVAQSDSDENFACFPHSSGPE 292
Apul_phy-2 PLPSGPPSLTTSAATPSLFSKSNRLKDALLNSLSDPAFAMWKDESFGIPNKAAVRMVYPDSDEGVTGVRDQRDFLSSYILWKEDFSELLPMSEFPIMHLMTTQKRFTNRRLGMHHPKTGAKIIYD----V 382
Amel_phy-2 ALPSGPPSLTASAAAPSLFSKSNRLKDALLNSLSDPAFAMWKDESFGIPNKAAIRMVYPDSEDSPTGVRDQRDFLSNYILWKEDFSELLPMSEFPIMHLMTTQKRYTGRRLGMHHPKTGERIIYD----V 384
. . . : * : .: : : . : : : . :. .
Ncra_phy-2 ASDIPPQARKLYMINKVRVLFDRSQRTSRLIGRDVSDMDVPLDLTHAYLRAMSPVHLKYLSNMGVRSSMSMSLESDGKLWGLIVCHSYGPAATRVPFSIRELSFFVGLAASTCLQKLLNSE--RLQAHRI 514 GAF_3 GAF PHY
Asub_phy-2 DGETITDSKTGEFLGGLVIFHNVTEYANTITAQKVQNERQFEDITNMIPQMIWTTTPTGQHDYYSRRWYEYTGLSVDQSLGNGWENPFHPDDMELTGKRWAHSLASGEEYRTEYRCQSKDGDWRWMLGRA 513
Anam_phy-2 SCNLSPECRTNFDTLEIQEHSDQAQETARLMFRPGSTHERSFESRLLYLRTMPDFPVHELEDGSAKSRVIIPLRVSGKLWGVVVS-KSAQSDAAITFLGRGLCRVIANAASTKLENLDASQ--VLDAQGP 419
Apul_phy-2 DGETITDSKTGEFLGGLVIFHNVTEYANTITAQKVQNERQFEDITNMIPQMIWTTTPTGQHDYYSRRWYEYTGLSVEQSLGSGWENPFHPDDMELTGKRWRHSLTTGEEYRTEYRCLSHDGEWRWMLGRA 512
Amel_phy-2 DGETINDTKTGEFLGGLVIFHNVTEYANTITAQKVQNERQFEDITNMIPQMIWTTTPTGSHDYFSRRWYEYTGLTPEQSLGDGWENPFHPDDMELTVKRWKHSLSTGEEYRTEYRCHSFDGEWRWMLGRA 514
: : :. : : :: : : . : : : : : . : * :. . . * . .
Ncra_phy-2 IETLRGRGRPDECITSSSHELLNLFDCDCG------FLVIEGEARTIGRLSSYIEAITLLKYLFFRGSRTILFSHNIGDDFKDLHFPSGFKAIAGVLYIPLSSTTDDCVVFYRKNQIREVHWAG-RPSLA 637 PHY
Asub_phy-2 VPMKDSSGKIVKWFGTCTDIHELVLAREDARQMRLQLLQVIEMAKITLWSVNSDRNLSMLEGAIVWNDDSKHSDEEIRRYAIGKNVFELFDTAAILDGGHHKEYIENILAGRQNDETSELHLKEGNTWVR 643
Anam_phy-2 LSRDPHSDNESTIVLASPQTMVKTLRADFA------ISFIDGIKSFVGPAKEPQEGLALVDYLRLRSPADVLTSEDFAADFPTLHYRPGFQSVKSLLFVPLSQDSENFVVYFREAHS------------- 530
Apul_phy-2 VPMKDESGKIVKWFGTCTDIHELVLAREDARQMRLQLLQVIEMAKITLWSVNSDRNLSMLEGAIVWNDNSKHSDEDIRNNAIGKNVYGLLDESAILDGDHHREYIENILSGKRLDETTELHLKESNRWVR 642 HisKA
Amel_phy-2 VPMKDDNGKIVKWFGTCTDIHELVLAREDARQTRLRLSQVIEMAKITLWSVNPQRDLSMLEGAIVWNDNTKMSDEEIRDKAIGKNVYELFDKDAILDGDHHRDYIENILTGKQIDETTEIHMQETNRWIR 644
: .. . :... : : . : : . . ::::. . . ..:: : :. : . :: : : .
Ncra_phy-2 GKIGRLE--PRNSFKKWTEVVDGTSKAWSIEHTNLAAMAQLLYG---SFIQVWREKETAINDTRLKRLLLHDASHQVRNPLNAVINCLEIALEK---HLDDGTKQVLTTSYTASKSLIYVIDDLLSLTGS 759 PHY HisKA
Asub_phy-2 TRFVPLQRLERNAGVEGDAFVDG-VVAVSMDVTDLRKREEQLRERDRENSRLLAQSEAAKEASKMKSQFLANMSHEIRTPIAGVIGMSELLLDDTEGTLTEEQRECAENLQRSANGLLTVINDILDFSKV 772 HisKA
Anam_phy-2 -----------------SGSSDRGIDAWSEADLQNAAMMRTVYF---KFSAIWRERDSAVKEGHMYQLLLSNSSHEFRTLLNAISNYLEIAEEG---RLDVKTSELVKSAKNTSQSLLSAVTKLLNCIGQ 637 HisKA
Apul_phy-2 TRFVPLQRVERNAGVEGDTFVDG-VVAVSMDVTDLRKREEQLRERDRENSRLLAQSEAAKEASKMKSQFLANMSHEIRTPIAGVIGMSELLLDDTEGTLTEEQRECAENLQRSANGLLTVINDILDFSKV 771 HisKA
Amel_phy-2 TRFVPLQRLERNAGVEGQAFVDG-VVAVSMDVTDLRKREEQLRERDRENSRLLAQSEAAKEASKMKSQFLANMSHEIRTPIAGVIGMSELLLDDTEGTLTEEQRECAENLQRSANGLLTVINDILDFSKV 773 HisKA
* * * : . : . : : ::* : :: : : **:.*. : .: . *: : * : . :::.*: .: .:*.
Ncra_phy-2 ITGSVPLLDEPFHLPNCLEEVLCPLRRLGQEKGIQLIMIPSTGPTQYVRGDPTSLQRSLSILVANAIQHTTSGQVVVKWYETAMNPENTVIHISITDTGPGFSERELDDMFQEFEQVPDEDFDEATSKPH 889 HATPase_c HATPase_c_2
Asub_phy-2 ESGRLDIEDVQFDLNVVVRDVNKMLTFAAERKGLMYIDETQELERLKVMGDPGRLRQILTNLLTNSIKFTSEGSVKMQVKIKEETAETVAVQFMVEDTGIGIEEEVRKRLFQPFSQADS----------- 891 HisKA HATPase_c
Anam_phy-2 GLGT------------------------------------------------------------------------------------------------------------------------------ 641
Apul_phy-2 ESGRLDIEDVQFDLNVVVRDVNKMLTFAAERKGLMYIDETQELERLKVMGDPGRLRQILTNLLTNSIKFTSEGSVKMQVRIREETAETVAVEFTVEDTGIGIEEEVRKRLFQPFSQADS----------- 890 HisKA HATPase_c
Amel_phy-2 ESGRLDIEDVQFDLNVVVRDVNKMLTFAAERKGLMYIDETQELERLKVMGDPGRLRQILTNLLTNSIKFTSEGSVTMQVKIREETAETVAVQFTVEDTGIGIEEEVRKRLFQPFSQADS----------- 892 HisKA HATPase_c
*
Ncra_phy-2 AVRDNVLRVGVGLAFVARFVKQRNGQLKVKSTKGRGSTFTLEIPFAVSSHCSSIASRRRDASPLPVLTMPGPLTFGAGSSVPSDRSTFGTSRDSKPSPPIIRPGSSTADTSPRDFQTPSPHHYTVIVADD 1019 HATPase_c_2 HATPase_c Response_reg
Asub_phy-2 STARRFGGTGLGLTISKNLVELMHGEISLESSLGLGTKASFWIPFNKAPYLSGDSPPLDMGPIPHRLHSELSMSEYSGAQPPGSPLKPGIRQPSVDS----RRASPAQLDLPLGLSDEERRKTHVLVVED 1017 HATPase_c Response_reg
Anam_phy-2 ---------------------------------------------------------------------------------------------------------------------------------- 641
Apul_phy-2 STARRFGGTGLGLTISKNLVELMHGEISLESSLGLGTKASFWIPFNKAPYLSGDSPPLDMGPIPHRLQSELSMSEYSGPQPPGSPLKPGIRQASVDS----RRASPAQLDLPLGLSDEERRNTHVLVVED 1016 HATPase_c Response_reg
Amel_phy-2 STARRFGGTGLGLTISKNLVELMHGEISLESSLGLGTKASFWIPFNKAPYLSGDSPPLDMGPIPHRLQSELSMSEYSGPQPPGSPLKPGIRQASVDS----RRGSPAQLDMPMVLSDEERRSTHVLVVED 1018 HATPase_c Response_reg
Ncra_phy-2 NMINVQILERRLTKLGHRVLVSRDGQECFNLFAS----NRSTVDFVLMDLNMPVVDGFASIRMIRDQEYSHPTPSRVVQCCGRTPIFAVSGMLRRGQEQQCKEAGFDGWMPKPVDMKRLVRCLAGGLDPN 1145 Response_reg
Asub_phy-2 NPINQQIALKTIKKLKFSVNAVWNGQEALDYLSKPETPEHPRPDIILMDVQMPILDGYKATYTIR-----HCEPFIADEQIQNTPIVAMTASAIQGDREKCEKAGMNDYLAKPVKGKTLEQMLLKWAVEK 1142 Response_reg
Anam_phy-2 ---------------------------------------------------------------------------------------------------------------------------------- 641
Apul_phy-2 NPINQQIALKTIKKLKFSVNAVWNGQEALDYLRKPESPDRPRPDVILMDVQMPIMDGYKATYTIR-----HCEPFVADQQIQNTPIVAMTASAIQGDREKCENAGMNDYLAKPVKGKTLEQMLLKWAVEK 1141 Response_reg
Amel_phy-2 NPINQQIALKTIKKLKFSVNAVWNGQEALDYLSKPESSERPRPDIILMDVQMPVMDGYKATYTIR-----HCEPFAADQQIQNTPIVAMTASAIQGDREKCENAGMNDYLAKPVKGKTLEQMLLKWAVEK 1143 Response_reg
Ncra_phy-2 ARRMCVYD-------------------------------------------------------EKRFELGGWFDAE------------------------------------------------------ 1166
Asub_phy-2 KRKTALSSNTPTNKSPVPTSIPQPPPQSGPSRDNVQEEAQPKMDIRPTTSGQRATDVLSTKLNKLNFQNDSVFARSAETAESRSMDRLRNEEKAMQLRDQQLFASAATPTKLLGIPGETPAQDNVTDARP 1272
Anam_phy-2 ---------------------------------------------------------------------------------------------------------------------------------- 641
Apul_phy-2 KRKAALSPPSAATQTPKPAGNPQDHPQSGPSRDTAHEEQQPDTEIRPTTSEQRASDVLSTKLNKLNFQNDSVFARSAETAESRSMDRLRNEEKAMQLRDQQLFASAATPKKLLGIPTETATQDSVTDDRP 1271
Amel_phy-2 KRKAALSSNPAVS--TKVVDVPRPALPSAALEDAPQEEIKTPADLLVPAPGQGASDVLATKLSKLNYQNDTVFARSAETAESRSMDRLRNEEKAMQLRDQQLFASAATPKKLLGVLGETVTQDDGIETRP 1271
Ncra_phy-2 -------------------------------------------------------------- 1166
Asub_phy-2 SKLTRENIEKLTRNGPLAHVSQPDVDTSSLDVTVDSIAQRRSGRPSIGARMKSEGEKTVLPE 1334
Anam_phy-2 -------------------------------------------------------------- 641
Apul_phy-2 SKLTRENIEKLTRNGPLDHVVQPDVDTSSLDVTVDSIAQHRTGRPSIGARMKSDGDKTVLPD 1333
Amel_phy-2 SKLTRENIEKLSRNAPLSHVTQPDVDTSSLDVTVDSNAPQRVGRPSIGTRLKSDGDKTVLPE 1333
Input files: MFA/Ncra.CLOCK.v02.Aure.phy-2.aln (alignment), ALN//Ncra.CLOCK.v02.Aure.phy-2.dom.rgns (regions: exons, domains, low-complexity, etc)
5 sequences, alignment length = 1430
sequence lengths:
1166 Ncra_phy-2
1334 Asub_phy-2
641 Anam_phy-2
1333 Apul_phy-2
1333 Amel_phy-2
| # | domain |
Ncra_phy-2 | Asub_phy-2 | Anam_phy-2 | Apul_phy-2 | Amel_phy-2 |
|---|
| 1 | GAF | 1 331..499
| 0 | 0 | 0 | 0 |
| 2 | GAF_3 | 1 331..497
2 522..573
| 0 | 0 | 0 | 0 |
| 3 | HATPase_c | 1 808..934
| 1 821..936
| 0 | 1 820..935
| 1 822..937
|
| 4 | HATPase_c_2 | 1 820..931
| 0 | 0 | 0 | 0 |
| 5 | HisKA | 1 696..758
2 1097..1121
| 1 706..774
| 1 113..144
2 574..633
| 1 536..558
2 705..773
| 1 707..775
|
| 6 | PAS_2 | 1 124..167
| 0 | 0 | 0 | 0 |
| 7 | PHY | 1 506..685
| 0 | 0 | 0 | 0 |
| 8 | Response_reg | 1 1013..1138
| 1 135..200
2 1011..1135
| 0 | 1 1010..1134
| 1 9..39
2 1012..1136
|
| |
ARC.colors file was not found, using default colors.
Alignment Regions Colorize, ARC v061