phy-1

Ncra_phy-1      ----------------------------------------------------------------------------------------------------------------------------------  0     
Asub_phy-1      MSDRMRPEDSQSRPQNANSRSSRHSDSDQNRSSSEQIRPSSSLWPGADQSRNCRSPLDPLSPDVADRVFPIRSVVSVDPNATPSHRSDNGSNSYFTHQNQQGRRFSVTSDSERKGPNGTPKTKSTSSTAS  130   
Anam_phy-1      MWSEDDQRRRQDNSSPSLHSDSSTEHQPEDRSSSEQPRVNSYLWPGSENAPNCRSPIDPLSPDVADRVFPIRSVISVDPNATPSHRSDHSNNGYFTQTPQEARRFSVTSDSENKGYNATS-NRTGGSAES  129   
Apul_phy-1      -----MPEDAQR-------------DSSQERSSSERPRKPSQLWPGADQARGGRSPLDPLSPDVQDRVFPIRSVVSVDPNATPSHRSDNGNNGYFHQGHQQGRRFSANSDSEQK----------------  96    
Amel_phy-1      -----------------------------------------------------------LSPDVADRVFPIRSVVSVDPNATPSHRSDTSNNGYFTQTPHQGRRFSTASESDHKAHDASSRNKTSGSTES  71    
                                                                                                                                                  

Ncra_phy-1      --------------------------------------------------------------------------------------------MGSYNGAKMNQFG------------FGLMVVIQEERDG  26     PAS_9 
Asub_phy-1      RSDNPQDRHVSNPANPPHRHPAQLFNELASSRGEDDNATLRSTDSRDTRGTRYTRPSDRAASIKSMG-ADDNGAGLLTARFKHVVSEGGHAIITGRDGDTLQRCEDEPIHIPGAVQGFGLLIALEEESEG  259   
Anam_phy-1      RPNNAQARKPSASAN--NRHSAQLFNELASSRHDN--SDNLSTDSRSTR----PRSADRAPSTKGADDP-ETGSGLITARFKHVVSEGGHAIITGRDGDTLQRCEDEPIHIPGAVQGFGLLVALEEETEG  250   
Apul_phy-1      --KETQDRQSSSTAH-QRRHPPQLFNELASSRNDSDNVTLNSTSSRDTR----PRSSDRTASMRSMGGQDEIGSGLLTARFKHVVSEGGHAIITGRDGDTLQRCEDEPIHIPGAVQSFGLLIAFEEESEG  219   
Amel_phy-1      HQHKSQDRQSSSSANKKHRHSAQLFNELASSRND---SDNRSTDSRSTR----PRSSERAPSMKSLSATDETGTGLITARFKHVVSEGGHAIITGRDGETLQRCEDEPIHIPGAVQSFGLLIAFEEETEG  194   
                                                                                                             : . :* .:::              ***::.::** :

Ncra_phy-1      RFIVRFVSENSKRIIGYTPQELFRMNNFLDIFTDEQSENLLDHIDFIRDEDSDPAINGPEVFSLSIRLPKAKTSVRLWCAIHVHPSRPELTICEFELDDDHDYPLRPPEEDLPDIPEDTLQSNPTTEELT  156    PAS_9 
Asub_phy-1      KLIVRVVSENSKRLIGYTPKQLFALDSFTDILSEDQTDNLLDHVDFIRDEDADVSSNGPEVFTMSIRTPQRK-LQKLWCAMHITDKNPGLIICEFELEDDPDFPLVPANEGTPDLPEDTLSSNPSADEFA  388   
Anam_phy-1      KLIVRVVSENSKRLIGYTPKQLFALDSFTDILSEDQTDNLLDHVDFIRDEEADVSSNGPEVFTMSIRTPQRK-LQKLWCAMHITDKNPGVIICEFELEDDPVYPLIPNNEGTPDLPEDTLASDPTADEYA  379    Response_reg 
Apul_phy-1      KLLVRVVSENSKRLIGYTPKQLFALDSFTDILSEDQTDNLLDHVDFIRDEDADVGANGPEVFTMSIRTPQRK-LQKLWCAMHINESNPGLVICEFELEDDQEFPLVPANEGTPDLPEDTLSSDPTADEFA  348   
Amel_phy-1      KLIVRVVSENSKRLIGYTPKQLFALESFTDILSEDQTDNLLDHVDFIRDEEADVGSNGPEVFTMSIRTPQRK-LQKLWCAMHITDKNPGLVICEFELEDDPVYPLVPHNEGTPDLPEDTLSSNPTADEYA  323   
                *:::**.*******:*****::** ::.* **::::*::* ***:******::* . ******::*** *: *   :****:*:  ..* : ******:*   :** * :*. **:***** *:*:::* 

Ncra_phy-1      ESTAISSKPLRVLRSARRRRGEAGAMQVFDIMSQVQEQLANAPNLEKFLKILVGIVKELTGFHRVMIYQFDSSFNGKVVTELVDPMQTRDLYKGLHFPATDIPSQARELYKLNKVRLLYDRDVESARIVC  286    GAF 
Asub_phy-1      ESTEIASKPLRVLRSARKRKGEAAAMEVFNVMSQVQEQLASAPNLDKFLKILVGVVKELTGFHRVMVYQFDAQWNGRVVTELVDPRATKDLYKGLNFPASDIPKQAREMYKVNKVRMLYDRDHETARLVC  518    GAF 
Anam_phy-1      ESTEIASKPLRVLRSARKRKGEAAAMEVFNVMSQVQEQLAAAPNLDKFLKILVGVVKELTGFHRVMVYQFDAQWNGRVVTELVDPRATKDLYKGLNFPASDIPKQARDLYKVNKVRMLYDRDLETARLVC  509    GAF 
Apul_phy-1      ESTEIASKPLRVLRSARKRKGEAAAMEVFNVMSQVQEQLASAPNLDKFLKILVGVVKELTGFHRVMVYQFDAQWNGRVVTELVDPRATKDLYKGLNFPASDIPKQAREMYKVNKVRMLYDRDHETARLVC  478    GAF 
Amel_phy-1      ESTEIASKPLRVLRSARKRKGEAAAMEVFNVMSQVQEQLAAAPNLDKFLKILVGVVKELTGFHRVMVYQFDSQWNGRVVTELVDPRATKDLYKGLNFPASDIPKQARELYKINKVRMLYDRDHETARLVC  453    GAF 
                :*** *:***********:*:***.**:** :********* ****:********:***********:****:.:**:********  *: *****:***:***.***::**:****:***** *:**:*

Ncra_phy-1      RTPEDLETPLDMTHSYLRAMSPIHLKYLANMAVRSSMSISINAFGDLWGLVSCHSYGPKGMRVSFPIRKMCRLIGDTASRNIERLSYASRLQARKLINTVPTDKNPSGYIIASSDDLLKLFNADFGMLSI  416    GAF  PHY 
Asub_phy-1      RTIEDLEKPLDLTYSYLRAMSPIHIKYLANMAVRSSMSISINAFDELWGLISCHAYGSRGTRVSFPIRKMCRLVGETASRNIERLSYASRLQARKLINTVPTSKNPSGYIIASSEDLLKLFDADFGMLSI  648    GAF  PHY 
Anam_phy-1      RTVEDLEKPLDLTYSYLRAMSPIHIKYLANMAVRSSMSISINAFNELWGLISCHAYGSKGTRVSFPIRKMCRLVGETASRNIERLSYASRLHARKLINTVPTSKNPSGYIIASSEDLLKLFDADFGMLSI  639    GAF  PHY 
Apul_phy-1      RTVEDLETPLDLTYSYLRAMSPIHIKYLANMAVRSSMSISINAFDELWGLISCHAYGSRGTRVSFPIRKMCRLVGETASRNIERLSYASRLHARKLINTVPTSKNPSGYIIASSEDLLKLFDADFGMLSI  608    GAF  PHY 
Amel_phy-1      RTVQDLEKPLDLTYSYLRAMSPIHIKYLANMAVRSSMSISINAFDELWGLISCHAYGSKGTRVSFPIRKMCRLVGETASRNIERLSYASRLHARKLINTVPTSKNPSGYIIASSEDLLKLFDADFGMLSI  583    GAF  PHY 
                *** :***.***:*:***** ****:*******************.:****:***:**.:* ************:*:*** ***********:**********.***********:******:*******

Ncra_phy-1      REETKILGKIEQSQEALAMLEYLRLRKFSSVVTSQDIKIDFPDLRYPPGFQVIAGLLYVPLSVGGNDFIVLFRKGQVREVKWAGNPHEKTIQAGSAAYLEPRKSFKVWYETVIGKSREWSEEEVETAAVL  546    PHY 
Asub_phy-1      RDETKVLGQVDETQEALALLEYLRLRKLTSVTATQDIKEEFPDLRYPPGFHHIAGLLVVPLSAGGNDFIVFFRRGQLREVKWAGNPYEKFVKEGTEGYLEPRKSFKTWSETVVGKCRDWTEEEIETAAVL  778    PHY 
Anam_phy-1      KDETKVLGHVEQTQEALAMLEYLRMRKLTCVTATQDLKEEFPDLRYPPGFHHIAGLLVVPLSSGGEDFITFFRKGQLREVKWAGNPYEKFVKEGTEGYLEPRKSFKTWSETVVGKCRDWTEEEIETAAVL  769    PHY 
Apul_phy-1      RDETKVLGHVDETQEALAMLEYLRLRKLTSVTATQDIKEEFPDLRYPPGFHHIAGLLVVPLSAGGNDFIVFFRRGQLREVKWAGNPYEKFVKEGTEGYLEPRKSFKTWSETVVGKCRDWTEEEIETAAVL  738    PHY 
Amel_phy-1      RDETKVLGHVEETQEALAMLEYLRMRKLTSVTATQDLKEEFPDLRYPPGFHHIAGLLVVPLSAGGNDFIVFFRRGQLREVKWAGNPYEKFVKEGTEGYLEPRKSFKTWSETVVGKCRDWTEEEIETAAVL  713    PHY 
                *::***:**: :::*****:*****:**::.*.::**:* :**********: ***** **** **:*** :**:**:*********:** :: *: .*********.* ***:**.*:*:***:*****

Ncra_phy-1      CLVYGKFIEVWRQKEAALRSSRLTRLLLANSAHEVRTPLNAIINYLEIALEGSLDQETRDNLARSHSASKSLIYVINDLLDLTKTEEGKDLVKDEVFDLLACIREATEPFRHDAKRKGITYEVIEHPGLP  676    PHY  HisKA  HATPase_c_2 
Asub_phy-1      CLVYGKFIEVWRQKEAALKNSQLTRLLLANSAHEVRTPLNAIINYLEIALEGSLDDDTRENLSKSHSASKSLIYVINDLLDLTKTEEGASLAKEEPFNLSATLKEATDQFSGDARRKKLSYELIEYPGFP  908    PHY  HisKA 
Anam_phy-1      CLVYGKFIEVWRQKEDALKNSQLTRLLLANSAHEVRTPLNAIINYLEIAMEGNLDEDTRESLAKSHSASKSLIYVINDLLDLTKTEEGGSLNKTEPFSLSATLRDATEQFAGDARRKKLSYDVVEHPGLP  899    PHY  HisKA 
Apul_phy-1      CLVYGKFIEVWRQKEAALKNSQLTRLLLANSAHEVRTPLNAIINYLEIALEGHIDDDTRENLAKSHSASKSLIYVINDLLDLTKTEEGGNLTKEDPFSLSATLKDAANQFSGDARRKNLSYDVIEHPGLP  868    PHY  HisKA 
Amel_phy-1      CLVYGKFIEVWRQKEAALKNSQLTRLLLANSAHEVRTPLNAIINYLEIALEGSLDEDTRENLSKSHSASKSLIYVINDLLDLTKTEEGGSLTKEEPFNLSATLRDATDQFAGDARRKKLSYDVIEHPGLP  843    PHY  HisKA 
                 *************** **:.*:***************************:** :*::** .*::************************ .* * : *.* * :::*:: *  **:** : *:::*:**:

Ncra_phy-1      RFVHGDQRRVRQAVANVTANAVKHTSEGSVRVELYVAEVQDNRARIDIVVQDSGQGMSNAQLDALFRELEQVDTDIGSESSDD----------DNSQSGKALGLGLAVVARILRNMDGQLRLKSEVGKGS  796    HATPase_c_2  Response_reg  HATPase_c 
Asub_phy-1      TTVIGDQRRVRQAISNVTANAIQNTKSGGITIEAYVLSREENHVEIEIAITDTGCGLSAKRLDSLFRELEQVQSEAHDMLDDE-PAFNAKQVESGSEGSRTIGLGLAVVARIVRNMGGQLRLKSVENKGS  1037   HATPase_c 
Anam_phy-1      ATVIGDQRKIRQAISNVIANAVQNTKAGGISTEIYVMSREENHVEVEITVADTGCGLNAKKLDTLFRELEQVQSEVHDVLDDK-PAPNLKQVEGGPDAKRTIGLGLAVVARIVRNMNGQLRLKSIEGKGS  1028   HATPase_c  HisKA 
Apul_phy-1      ATVIGDQRKVRQAISNVVANAIQNTKEGGICIEAHIISRHESKAEVMIAITDTGCGFDTKRLDSLFRELEQVQSEVHDMLNVEAPAPNAKLVESGSEEKRTIGLGLAVVARIVANMNGQLRLKSVQDRGS  998    HATPase_c  HisKA 
Amel_phy-1      ATVIGDQRKVRQAISNVTANAIQNTKTGGISIEMYVLSREEQHVEVEITITDTGCGLNSKKLDSLFRELEQVQSETHDMLDEE-PAFNAKQVESGSEETRTIGLGLAVVARIVRNMNGQLRLKSVENKGS  972    HATPase_c 
                *  * ****::***::** ***:::*. *.:  * :: . .:.:..: *.  *:* *:.  :**:********:::  .  . .          ...:  :::******* **: **.*******  .:*

Ncra_phy-1      RFVIQLPFDLPEEETSRDTVGASSGNTAQLSLGSGTASASAASVTQMQDGEVMLVDRNNGSSWSVNNATGSLASKKSYDDNLSITSKGSGRSALSDADRLIDAIQNPLTLGEPEPESVARQRRNSRGPYY  926    HATPase_c 
Asub_phy-1      RFTLQLPFDVPANEQQKTIAGSASSGSQRSAPLS--ASNE-GEITLVERG-QRRNS--TEHTLSRKSSTESLRSKHSLPSMKSGRSGASQESSRSEADRLIDAIQSPMDGKRGAL-----SRGSSSG-MH  1155   HATPase_c 
Anam_phy-1      RFTIQLPFDIPPS-GQKSLTGSVSEGSQRSTLIS--AGNE-GEITLVERGSARRNS--TEHPLSRTTSNESIGSRRSLPSMKSGRSHASEDSSRSEADRLIDAISSPIDNKRGAP-----SRGKDSNNLQ  1147   HATPase_c 
Apul_phy-1      RFTIQLPFELPENERQKTIEGSISESSTHSTALT--GGDEEGEITLVDRISRRRNS--AEQSLSRASSSESMRSKR---SMKSGRSQASHDSGRSEADRLIDAIQSPMDNKRGAP-----SRGSSSGGLQ  1116   HATPase_c 
Amel_phy-1      RFTLQLPFDLPTN-GQKTLAGSMSEGSQRSTLIS--AGNE-GEITLVERGSQRRNS--TEQSLSRTTSNESIHSKRSLPSMKSGRSHASEESTRSEADRLIDAISSPVDAKRGAP-----SRGKGSGSGQ  1091   HATPase_c 
                ***.:****::* .  .:   *: * .: : :  :  ..   ..:* ::       .     . *  .:. *: *::   .  *  * .*  *  *:*** ****..*:   .        .* .. .  

Ncra_phy-1      NPSSSLLGSSKGRSVSPGSRKRPDVPTRSVSSPNTKKDLPFEKPTTEVAPGPSEPAPAAQGVQYVTDSRVPIKPVKLPDEMFDKPVVPPQSTSKVLFEIKDAVADKAKAASSAVKEQQSVSSQQPAPPPA  1056  
Asub_phy-1      RPV---LGSRHSTAPVPSS-----TRPRSLSYETNSQEL-----TTEVNRNPP-------GRTSVMDQGRPIKAVRVPEEVDDVPAAAQ---------------DQPAESSRLLDEHQ-------QEPPE  1243   HATPase_c 
Anam_phy-1      RPK---LGSRHSTSALSGSFQA--RRPRAFSNEANLQEL-----TTEVIKDPP-------GQASIMDQGRPVHAVRVPEETDDVPAAAQ---------------DQPQESSRVLGEHQ-------EEPPE  1238  
Apul_phy-1      RPK---LGSRHSTSALPSSSQ---SRSRALSQGQGPQEL-----VTEVIKDPP-------GRQSIMDQGRPVKAVRVAEEDDDVPAAAQ---------------DQPHESSRVLDEPQ-------EEVPE  1206   HATPase_c 
Amel_phy-1      RPM---LGSRHSTSALPSSSQS--LRPRSMSNETNPQEL-----STEVIRDPP-------GRKSIMDQGRPVRAVRVPEETDDVPPAAQ---------------DQPQESSRVLGAHQ-------EEPPE  1182  
                 .*    *** :. :  ..*       .*: *     ::*      ***  .*.       *   : *.  *::.*::.:*  * * ..                *:.  :*  :   *          *

Ncra_phy-1      PAKEASTTNNKLQVLVAEDDPINVKVLRKRLEKAGYKVTHALNGEDCAAVYEDKPVVFDVVLMDMQMPIVDGLTSTKMIRAFEKTNRDGSGQQLSDIASDHGRVPIFAVSASLVEQEKDTYVDAGFDGWI  1186   Response_reg 
Asub_phy-1      TTDEAPTAD-HMRVLVAEDDPVNSRIIKKRLEKMGHEIYLTSNGEECSSIHGDKSGFFDVVLMDMQMPIVDGLTATKVIRSFEKSHP---THVLSTRASLNGRIPIIAVSASLLERERQMYIDAGFDGWI  1369   HATPase_c  Response_reg 
Anam_phy-1      STDEAPTAD-HMRVLVAEDDPVNSRIIKKRLEKMGHDIYLTSNGEECSSMHGDKSGYFDVVLMDMQMPIVDGLTAAKIIRSFEKSHP---SHLLSTRASLNGRIPIIAVSASLLERELDMYVDAGFDGWI  1364   Response_reg 
Apul_phy-1      TTDEAPTAD-HMRVLVAEDDPVNSRIIKKRLEKLGHEVHLTSNGEECSSFHGDKSGFFDVVLMDMQMPIVDGLTATKVIRSFEKSHP---THLLSTRASLNGRIPIIAVSASLLERERDIYIDAGFDGWI  1332   HATPase_c  Response_reg 
Amel_phy-1      TTDEAPTAD-HMRVLVAEDDPVNSRIIKKRLEKMGHEIYLTSNGEECSSTHGDKSGYFDVVLMDMQMPIVDGLTAAKVIRSFEKSHP---SHLLSTRASLNGRIPIIAVSASLLEKERQIYVDAGFDGWI  1308   Response_reg 
                 .:.**.*:: :::****** *:* ::::***** *:.:  : ***:*:: : **.  *****************::*:* :***::     : **  ** :**:**:******:*:* : *:*******

Ncra_phy-1      LKPIDFKRLETLLQGITDDKARNDALYVQGQWERGGWFE----------------------------KKGVGNMGQEQEENHEQ----------------------------------------------  1242   Response_reg 
Asub_phy-1      LKPISFPRLQEIMTGIIDNNVRQRNVYESGAWERGGWFEEFQSDVWEAETKPDDDKIAMSGPSDAVQKEAATDDPQEKGDDDDDDSRQTQEQHRIAAVQDRDGGIEPPPGSQD-KADPDVNGELHDF---  1495   Response_reg 
Anam_phy-1      LKPISFPRLQEIMTGIVDKKVRRKNVYAKGGWERGGWFEASQNNVWEADTKPDEDKIAMSGPSEAVQVQAASDDPQEKGDDEDD-SRQTQEQHRIAGVQDRDAGIEAPPEQLGEKDDPDVNGEPHDFPRN  1493   Response_reg 
Apul_phy-1      LKPISFQRLQEIMTGIVDKDVRHKNVYQLGEWERGGWFEESQSDVWEANTKPDDDKIAMSGPSKAVQKEAASDDPQEKGSDDDD-SRQTKEQHRIAAVQDRDDGIEPPPEQQG-QDDPDVNGEPHDF---  1457   Response_reg 
Amel_phy-1      LKPISFPRLQEIMTGIVDKNVRHKNVYVKGEWERGGWFEESQSDVWDAETKPDDDKIAMSGPSNAVQKEAASDDPQEKGDDEDD-SRQTQEQHRIANVQ-------------------------------  1406   Response_reg 
                *****.* **  :: ** *...*.  :*  * ********                             : . :  **: .:.::                                             

Input files: MFA/Ncra.CLOCK.v02.Aure.phy-1.aln (alignment), ALN//Ncra.CLOCK.v02.Aure.phy-1.dom.rgns (regions: exons, domains, low-complexity, etc)

5 sequences, alignment length = 1560
sequence lengths:
  1242  Ncra_phy-1
  1495  Asub_phy-1
  1493  Anam_phy-1
  1457  Apul_phy-1
  1406  Amel_phy-1

#domain Ncra_phy-1Asub_phy-1Anam_phy-1Apul_phy-1Amel_phy-1
1GAF1  199..367
2  529..548
3  717..761
1  431..599
2  635..780
1  422..590
2  625..773
1  391..559
2  592..742
1  366..534
2  571..716
2HATPase_c1  680..804
1  912..1045
2  1197..1296
1  903..1036
2  1258..1292
1  872..1006
2  1199..1255
1  847..980
2  1202..1239
3HATPase_c_21  644..794
0000
4HisKA1  569..633
1  801..865
1  792..856
2  950..980
1  761..825
2  925..949
1  736..800
5PAS_91  14..116
0000
6PHY1  374..556
1  606..788
1  597..780
1  566..748
1  541..723
7Response_reg1  682..771
2  1069..1199
1  1255..1382
1  283..348
2  1250..1377
1  1218..1345
1  1194..1321

ARC.colors file was not found, using default colors.

Alignment Regions Colorize, ARC v061