nop-1
Ncra_nop-1 MIHPEQVADMLRPTTSTTSSHVPGPVPTVVPTPTEYQTLGETGHRTLWVTFALMVLSSGIFALLSWNVPTSKRLFHVITTLITVVASLSYFAMATGHATTFNCDTAWDHHKHVPDTSHQVCRQVFWGRYV 130 Bac_rhodopsin
Asub_nop-1 -----MIVDPVQAFKATSS---VAPLPTVVPSLPEYQTVTETGTRTLWAVCVLMLLSMIVFVGLSWTVPISKRLYHVVTTLIVTFASLSYFAMATGHGISYHRTTVTDSHRHVPDTTHDVYRQVYWARYV 122 Bac_rhodopsin
Anam_nop-1 -----MIVDPVEAFKATSS---VAPLPTVVPSLPEYQTVTETGTRTLWAVCILMLLSMIVFVGLSWTTPISKRVYHVITTLIVTFASLSYFAMATGHGISYHRTTVTDEHRHVPDTTHDVYRQVYWARYV 122 Bac_rhodopsin
Apul_nop-1 -----MIVDPVEAFKATSS---VAPIPTVVPSLPEYETVTETGTRALWAVFVLMLLSMIVFVGLSWTVPISKRLYHVVTTLIVTFASLSYFAMATGHGISYHRTTVTDSHRHVPDTTHDVYRQVYWARYV 122 Bac_rhodopsin
Amel_nop-1 -----MIVDPVEAFKATSS---VAPLPTVVPSLPEYQTITETGTRTLWAVFVLMLLPMIVFVGLSWTTPISKRLYHIITTLIVTFASLSYFAMATGHGISYHRTTVTDSHRHVPDTTHDVYRQVYWARYV 122 Bac_rhodopsin
:.* :.. .:*:* .*:*****: .**:*: *** *:**.. **:*. *. ***..* ***::*::****...************. ::: *. * *:*****:*: ***:*.**
Ncra_nop-1 DWALTTPLLLLELCLLAGVDGAHTLMAIVADVIMVLCGLFAALGEGGNTAQKWGWYTIGCFSYLFVIWHVALHGSRTVTAKGRGVSRLFTGLAVFALLLWTAYPIIWGIAGGARRTNVDTEILIYTVLDL 260 Bac_rhodopsin
Asub_nop-1 DWSLTTPLLLLDLALLAGLSGGHILLAVVADIIMVLTGLFAAYGSEG-TPQKWGWYTIACIAYLVVIWMLAVHGRANAMAKGGKVGKFFGAIAGFTLVIWTIYPIVWGVADGSRKMTVDQEIIAYAVLDL 251 Bac_rhodopsin
Anam_nop-1 DWSLTTPLLLLDLAMLAGLSGGHILLAIVADVIMVLTGLFAAYGNEG-TPQKWGWYTIACIAYLVVIWMLAVHGRANAMAKGGKVGKFFASIAGFTLVIWTIYPIVWGIADGSRKMTVDQEIIAYAVLDL 251 Bac_rhodopsin
Apul_nop-1 DWSLTTPLLLLDLALLAGLSGGHILLAIVADVIMVLTGLFAAYGTEG-TPQKWGWYAIACIAYLVVIWMLAVHGRANAMAKGGKVGKFFASIAGFTLVIWTIYPIVWGVADGSRKMSVDQEIIAYAVLDL 251 Bac_rhodopsin
Amel_nop-1 DWSLTTPLLLLDLALLAGLSGGHILLAIVADVIMILTGLFAAFGSEG-TPQKWGWYAIACIAYLVVIWMLAVHGRANAMAKGGKVGKFFASIAGFTLVIWTIYPIVWGIADGSRKMTVDQEIIAYAVLDL 251 Bac_rhodopsin
***:********:*.:***:.*.* *:*:***:**:* ***** * * * ******:*.*::**.*** :*:** .. *** *.::* .:* *:*::** ***:**: .*:*: .** **: *:***
Ncra_nop-1 LAKPVFGFWLLLSHRAMPETNIDLPGYWSHGLATEGRIRIGEED--- 304 Bac_rhodopsin
Asub_nop-1 LAKPVFGAWLLFTHQSMPETQVELGGFWAHGVSSEGAIRVGEDDEGA 298 Bac_rhodopsin
Anam_nop-1 LAKPVFGAWLLFTHQSMPETQVELGGFWTHGVSSEGAIRVGEDDEGA 298 Bac_rhodopsin
Apul_nop-1 LAKPVFGAWLLFTHQSMPETQVELGGFWTHGVSSEGAIRVGEDDEGA 298 Bac_rhodopsin
Amel_nop-1 LAKPVFGAWLLFTHQSMPETQVELGGFWTHGVSSEGAIRVGEDDEGA 298 Bac_rhodopsin
******** ***::*::****:::* *:*:**:::** ** **:*
Input files: MFA/Ncra.CLOCK.v02.Aure.nop-1.aln (alignment), ALN//Ncra.CLOCK.v02.Aure.nop-1.dom.rgns (regions: exons, domains, low-complexity, etc)
5 sequences, alignment length = 390
sequence lengths:
304 Ncra_nop-1
298 Asub_nop-1
298 Anam_nop-1
298 Apul_nop-1
298 Amel_nop-1
| # | domain |
Ncra_nop-1 | Asub_nop-1 | Anam_nop-1 | Apul_nop-1 | Amel_nop-1 |
|---|
| 1 | Bac_rhodopsin | 1 44..280
| 1 35..271
| 1 35..271
| 1 35..271
| 1 35..271
|
| |
ARC.colors file was not found, using default colors.
Alignment Regions Colorize, ARC v061