gpd-1

Ncra_gpd-1      MVVKVGINGFGRIGRIVFRNAIEHDDIHIVAVNDPFIEPKYAAYMLRYDTTHGNFKGTIEVDGADLVVNGKKVKFYTERDPAAIPWSETGADYIVESTGVFTTTEKASAHLKGGAKKVIISAPSADAPMY  130    Gp_dh_N 
Asub_gpd-1      MPVNVGINGFGRIGRIVFRNAVEHDNVHVVAVNDPFIEPEYAAYMLKYDSVHGQFKGTIEVSGKDLIVNGKKVTFYTERDPANIPWAETGAYYVVESTGVFTTTEKASAHLKGGAKKVVISAPSADAPMF  130    Gp_dh_N 
Anam_gpd-1      MPVNVGINGFGRIGRIVFRNAVEHDNVHVVAVNDPFIEPEYAAYMLKYDSVHGQFKGTIEVSGKDLIVNGKKVTFYTERDPANIPWAETGAYYVVESTGVFTTTDKASAHLKGGAKKVVISAPSADAPMF  130    Gp_dh_N 
Apul_gpd-1      MPVNVGINGFGRIGRIVFRNAVEHDNVHVVAVNDPFIEPEYAAYMLKYDSVHGQFKGTIEVSGKDLIVNGKKVTFYTERDPANIPWAETGAYYVVESTGVFTTKEKASLHLKGGAKKVVISAPSADAPMF  130    Gp_dh_N 
Amel_gpd-1      MPVNVGINGFGRIGRIVFRNAIELDNVHVVAVNDPFIEPEYAAYMLKYDSVHGQFKGTIEVSGKDLIVNGKKVTFYTERDPANIPWAETGAYYVVESTGVFTTTEKASAHLKGGAKKVVISAPSADAPMF  130    Gp_dh_N 
                 * *:*****************:* *::*:**********:******:**:.**:***** *.* **:******.******** ***:**** *:*********.:*** *********: *********

Ncra_gpd-1      VMGVNNETYDGSADVISNASCTTNCLAPLAKVIHDNFTIVEGLMTTVHSYTATQKTVDGPSAKDWRGGRTAAQNIIPSSTGAAKAVGKVIPDLNGKLTGMAMRVPTANVSVVDLTARIEKGATYDEIKEV  260    Gp_dh_N  ADH_zinc_N  Gp_dh_C 
Asub_gpd-1      VMGVNEKTYKSDIQVLSNASCTTNCLAPLAKVINDKFGIVEGLMTTIHSYTATQKTVDGPSGKDWRGGRAAAQNIIPSSTGAAKAVGKVIPELNGKLTGMSMRVPTANVSVVDLTARLEKGASYETIKKA  260    Gp_dh_N  Gp_dh_C 
Anam_gpd-1      VMGVNEKSYKSDIQVLSNASCTTNCLAPLAKVINDKFGIVEGLMTTIHSYTATQKTVDGPSGKDWRGGRAAAQNIIPSSTGAAKAVGKVIPELNGKLTGMSMRVPTANVSVVDLTARLEKGASYETIKKA  260    Gp_dh_N  DapB_N  Gp_dh_C 
Apul_gpd-1      VMGVNEKSYKSDIEVLSNASCTTNCLAPLAKVINDKFGIVEGLMTTIHSYTATQKTVDGPSGKDWRGGRAAAQNIIPSSTGAAKAVGKVIPELNGKLTGMSMRVPTANVSVVDLTARLEKPASYETIKKA  260    Gp_dh_N  Gp_dh_C 
Amel_gpd-1      VMGVNEKSYKSDIQVLSNASCTTNCLAPLAKVINDKFGIVEGLMTTIHSYTATQKTVDGPSGKDWRGGRAAAQNIIPSSTGAAKAVGKVIPQLNGKLTGMSMRVPTANVSVVDLTARLEKGASYETIKKA  260    Gp_dh_N  Gp_dh_C 
                :*****:::*... :*:*****************:*:* ********:** ***********.*******:*********************:********:******** *******:** *:*: **:

Ncra_gpd-1      IKKASEGPLAGILAYTEDEVVSSDMNGNPASSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLISYISKVDAKKA  338    Gp_dh_C 
Asub_gpd-1      IKDASEGELKGILGYTEDEIVSSDMCGANESSIFDAKAGISLNDNFVKLVSWYDNEWGYSRRVLDLLAYIAKVDGNA-  337    Gp_dh_C 
Anam_gpd-1      IKDASEGELKGILGYTEDEIVSSDMCGANESSIFDAKAGISLNDNFVKLVSWYDNEWGYSRRVLDLLAYIAKVDGNA-  337    Gp_dh_C 
Apul_gpd-1      IKEASEGELKGILGYTEDEIVSSDMCGANESSIFDAKAGISLNDNFVKLVSWYDNEWGYSRRVLDLLAYIAKVDGNA-  337    Gp_dh_C 
Amel_gpd-1      IKDASEGELKGILGYTEDDIVSSDMCGANESSIFDAKAGISLNDNFVKLVSWYDNEWGYSRRVLDLLAYIAKVDGNA-  337    Gp_dh_C 
                .**.**** * ***.****::***** *   ********* ***.**********************::**:***.: 

Input files: MFA/Ncra.CLOCK.v02.Aure.gpd-1.aln (alignment), ALN//Ncra.CLOCK.v02.Aure.gpd-1.dom.rgns (regions: exons, domains, low-complexity, etc)

5 sequences, alignment length = 390
sequence lengths:
  338  Ncra_gpd-1
  337  Asub_gpd-1
  337  Anam_gpd-1
  337  Apul_gpd-1
  337  Amel_gpd-1

#domain Ncra_gpd-1Asub_gpd-1Anam_gpd-1Apul_gpd-1Amel_gpd-1
1ADH_zinc_N1  59..137
2  125..214
0000
2DapB_N1  2..121
1  2..64
2  71..144
3  235..306
1  2..64
2  68..152
3  235..306
1  2..67
2  69..125
3  254..308
0
3Gp_dh_C1  155..312
1  155..312
1  155..312
1  155..312
1  155..312
4Gp_dh_N1  2..150
1  2..150
1  2..150
1  2..150
1  2..150

ARC.colors file was not found, using default colors.

Alignment Regions Colorize, ARC v061