fwd-2

Ncra_fwd-2      ----------MEAHARATASMEEAQSPHAAESSTKTSRRRGHSLSVSPPWHTAKSTTHNHGPRDSTLQHSIFGQNHG-----------------------PFRSHRQNSAASDDAVPAHPKQGHKLKGML  97    
Asub_fwd-2      MSDYDLTHVHDLHHKYYSSSQPSSGAESSSSSTFSSSSTRPHSTQLSSTTTLTSSIQGHHLSRPSTQPIPIPQQYQTYDQSLEADQRREADMFREVEWRSPKLDQTERDMSLKRASSAEPSQGTNTKTKQ  130   
Anam_fwd-2      ----------------------------------------------------------------------------------------------------------------------------------  0     
Apul_fwd-2      ----------------------------------------------------------------------------------------------------------------------------------  0     
Amel_fwd-2      ----------------------------------------------------------------------------------------------------------------------------------  0     
                                                                                                                                                  

Ncra_fwd-2      RRASVSFR------SGVKGIVHRRTSVPNTPTFEPDAG---------AGPSQPSATARPTTAHSTWNKLRQATSFHRHSRRMSVHHGEYPFGHIALQSPPLPVPGSGEQPPIIPRNTGAAARQAAASAGH  212   
Asub_fwd-2      QKENGIFRKTSQKYRGLRAHLHGRTRRNSGDLMEGVEGSISASIPEHAASSGPYHKGIQRCFNPTNRLIQSLKAPRHDTPQPANGPSPTLQSSSTMPALHYNPDQHFMQRYVSDSSAGEAARRAASATNA  260   
Anam_fwd-2      -----------------------------------------------------------------------------------------------------------MQRYVSDTHAGEAARRAASATNA  23    
Apul_fwd-2      ---------------------------------------------------------------------------------------------------------------MSESSAGEAARRAASASNA  19    
Amel_fwd-2      -----------------------------------------------------------------------------------------------------------MHRYISDSNAGEAARRAASATNA  23    
                                                                                                                                :    :* ***:**:::.

Ncra_fwd-2      GLEMINIPAPRPWANDGMDDYESGIGIAVTRGRSSESDVFMDGVDSDVDIELNSPSPNDEVDIIKVDFISQLPLELGIHILGQLDASSLASASLVSRSWNHAAMNQHIWRESFLREKT-TTYATSGAVKP  341    F-box  F-box-like 
Asub_fwd-2      ASYAQNSRSFVPHYQATRDSHRNRIG-SIPGASDSGADLASN---ADLDVEMSDIAEIMAPVNKCSDPVEALPTEIVALILSHLDSDSLKSAQRVAKSWSRIAKDPLIWRAQYLQQYEKQTYVSPAPIQI  386    F-box  F-box-like 
Anam_fwd-2      ASYAPSSRSFVPQYQATRDLHRSRIG-SIPGASDSGADLASN---ADLDVEMADIAEIVVPSTKCSDPVEALPTEIVALILAHLDPESLKASQRVAKSWSRIAKDPLIWRAQYLQQYEKQTYVSPAPIQI  149    F-box  F-box-like 
Apul_fwd-2      ASYASNSRQFIPQYQATRDLHRSRIG-SIPGASDSGADLASN---ADMDVEMSDIAEVALPVNKCSDPVEALPTEIVALILSHLDSDSLKASQRVAKSWARIAKDPLIWRAQYLQQYEKQTYVSPAPIQI  145    F-box  F-box-like 
Amel_fwd-2      ASYASNARPFVPHYQATRDLHRSRIG-SIPGASDSGADLASN---ADLDVEMADIAEIVAPVNKCSDPVEALPTEIVTLILSHLDPESLKAAQRVSKSWSRIAKDPLIWRAQYLRQYEKQTYVSPAPIQI  149    F-box  F-box-like 
                 .    .     *  :   * :.. ** ::. . .* :*:  :   :*:*:*: . :          * :. ** *:   **.:**..** ::. *::** : * :  *** .:*::    **.:...::

Ncra_fwd-2      G-TGLGVPAIRPGNDWKEIYRVREELDKRWKEGK--ARPIYLHGHTDSIYCLQFDEHKIITGSRDKTIRVWDMKTYSCKLVLGPPEIINDSDLSLLHDEAGNPIHYATLPELDPHPSASGQIQTPARSHF  468    Nucleoporin_N  WD40  Nup160 
Asub_fwd-2      GGIGTGIPNQ-PMQHWELMHDARKRIDKNWTRGDQGGKGIYLAGHTDSVYCVQFDEQKIITGSRDRTIRVWDINTYKCLKVIGGPSVRPSPGPKVLRTVEYPKFHHAES-------SVNG-------TAH  501    WD40  Nup160 
Anam_fwd-2      GGAGTGIPNQ-PMQHWELMHDARRRIDKNWTRGDQGGKGIYLAGHTDSVYCVQFDEQKIITGSRDRTIRVWDINTYKCLKVIGGPSVRPSPGPKVLRTVEYPKFQHAES-------SVNG-------TAY  264    PQQ_2  WD40  Nup160 
Apul_fwd-2      GGIGTGIPNQ-PMQHWELMHDARRRIDKNWTRGDQGGKGIYLAGHTDSVYCVQFDEQKIITGSRDRTIRVWDINTYKCLKVIGGPSVRPSPGPKVLRTVEYPKFHHAES-------SVNG-------TAY  260    PQQ_2  WD40  Nup160 
Amel_fwd-2      GGTGTGLPDQ-PMQHWELMHDARRRIDKNWTRGDQGGKGIYLAGHTDSVYCVQFDEQKIITGSRDRTIRVWDINTYKCLKVIGGPSVRPSPGPKVLRTVEYPKFHHAET-------SVNG-------TAY  264    WD40  Nup160 
                 *  * *:*   * :.*: :: .*..:**. ..*.  .: *** *****:**:****:********:******::**.*  *:* *.:   .. .:*:      :::*         *..*       : 

Ncra_fwd-2      SSPALFSPPIFHRASILCLQYDDEILVTGSSDATCIVYDIASGYQPVRQLRHHSAAVLDLVFDDKHIVTCSKDVSICVWDRATGALLKQLRGHTGPVNAVQMRGNTIVSCSGDFRVKLWNIETGKQIREF  598    Nup160  PQQ_2  WD40 
Asub_fwd-2      GNSIYHVPSDFHSASILCLQYDHEILVTGSSDNDLLVWDVNT-YEPIRRLKQHTGGVLDVAFDEKHIVSCSKDCTIIVWDRKTLEPIRTLTGHRGPVNAVQLRGNLLVSASGDGVARLWDLNKMQCVREF  630    Nup160  WD40 
Anam_fwd-2      GNSIYHVPSDFHSASILCLQYDHEILVTGSSDNDLLVWNVNT-YEPIRRLKQHTGGVLDVAFDEKHIVSCSKDCTIIVWDRKTLEPIRTLTGHRGPVNAVQLRGNLLVSASGDGVARLWDLNKMQCVREF  393    Nup160  WD40  PQQ_2 
Apul_fwd-2      GNSIYHVPSDFHSASILCLQYDHEILVTGSSDNDLLVWDVKT-YEPIRRLKQHTGGVLDVAFDEKHIVSCSKDCTIIVWDRKTLEPIRTLTGHRGPVNAVQLRGNLLVSASGDGVARLWDLNKMQCVREF  389    Nup160  PQQ_2  WD40 
Amel_fwd-2      GNSIYHVPSDFHSASILCLQYDHEILVTGSSDNDLLVWNINT-FEPIRRLKQHTGGVLDVAFDEKHIVSCSKDCTIIVWDRKTLEPIRTLTGHRGPVNAVQLRGNLLVSASGDGVARLWDLNKMQCVREF  393    Nup160  WD40 
                ....  . *. ** ****** **.*********   :*::: : ::*:*:*::*:..***:.**:****:**** :* ** * *   :: * ** *******:*** :**.***  .:**:::. : :**

Ncra_fwd-2      LGHTKGLACSQFSEDGRYVASAGNDRVIRIWDANTGECVREMKAHGDLVRSLHVDSVSGRLISGSYDTDIKVWDMETGAQLLDFPQWHNSWVLSAKSDYRRIVSSGQDPKILIMDFGADVK-GIEMLETP  727    WD40  PQQ_2  Nucleoporin_N 
Asub_fwd-2      PQKERGLAAVEFSDDAKFVLAGGNDHVTYKFDVASGQEVKQFTGHTQLVRSLFLDTQNRRVVSGSYDLDLRVYDYDTGALLGRFNEWTTSWMLAAKCDYRRIVSTSQDGRILMIDFGRDAS-GQVMPGVE  759    WD40 
Anam_fwd-2      PQKERGLAAVEFSDDAKFVLAGGNDHVTYKFDVASGEEVKTFTGHTQLVRSLFLDTQNRRVVSGSYDLDLRVYDYDTGALLGRFNEWTTSWMLAAKCDYRRIVSTSQDGRILMIDFGRDVS-GQVMPGVE  522    WD40  PQQ_2 
Apul_fwd-2      PQKERGLAAVEFSDDAKFVLAGGNDHVTYKFDVATGAEVKQFTGHTQLVRSLFLDTQNRRVVSGSYDLDLRVYDYDTGALLGRFNEWTTSWMLAAKCDYRRIVSTSQDGRILMIDFGRDATTGQVMPGVE  519    WD40  PQQ_2 
Amel_fwd-2      PQKERGLAAVEFSDDAKFVLAGGNDHVTYKFEVATGNEVKQFTGHTQLVRSLFLDTQNRRVVSGSYDLDLRVYDYDTGALLGRFNEWTTSWMLAAKCDYRRIVSTSQDGRILMIDFGRDNS-GQVMPGVE  522    WD40  Nup160 
                *  : :***. :**:*.::* :.***:*   ::. :*  *: :..* :*****.:*: . *::***** * :*:* :*** *  * :* .**:*:**.*******:.** :**::*** * . *  *  .

Ncra_fwd-2      APKVVPQHQQQTNNQVAVPSEPGPGGYF  755   
Asub_fwd-2      LLKGVSPLSL------------------  769   
Anam_fwd-2      LLKGVNPLSL------------------  532   
Apul_fwd-2      LLRGVAPLSL------------------  529   
Amel_fwd-2      LLKSVEPLSL------------------  532   
                   : *   .                  

Input files: MFA/Ncra.CLOCK.v02.Aure.fwd-2.aln (alignment), ALN//Ncra.CLOCK.v02.Aure.fwd-2.dom.rgns (regions: exons, domains, low-complexity, etc)

5 sequences, alignment length = 910
sequence lengths:
  755  Ncra_fwd-2
  769  Asub_fwd-2
  532  Anam_fwd-2
  529  Apul_fwd-2
  532  Amel_fwd-2

#domain Ncra_fwd-2Asub_fwd-2Anam_fwd-2Apul_fwd-2Amel_fwd-2
1Cytochrom_D11  570..682
0000
2F-box1  278..325
1  322..368
1  85..131
1  81..127
1  85..131
3F-box-like1  280..326
1  324..370
1  87..133
1  83..129
1  87..133
4Nucleoporin_N1  376..445
2  446..552
3  525..713
0000
5Nup1601  382..445
2  465..604
3  602..678
4  644..707
1  427..590
2  595..646
1  190..353
2  269..409
1  185..282
2  265..333
3  305..363
4  354..408
5  434..503
1  190..353
2  359..405
3  428..510
6PQQ_21  474..680
2  620..696
01  175..224
2  273..312
3  293..481
1  172..220
2  267..308
3  290..478
0
7WD401  377..409
2  477..506
3  511..547
4  551..587
5  591..629
6  633..671
7  681..712
1  423..456
2  509..539
3  543..579
4  583..619
5  623..661
6  665..703
7  716..744
1  186..219
2  272..302
3  306..342
4  346..382
5  386..424
6  428..466
7  479..507
1  182..215
2  268..298
3  302..338
4  342..378
5  382..420
6  424..462
7  475..503
1  186..219
2  272..302
3  306..342
4  346..382
5  386..421
6  428..466
7  479..507

ARC.colors file was not found, using default colors.

Alignment Regions Colorize, ARC v061