frq
Ncra_frq --MADSGDKSQGMRPPPFDSRGHPLPRRASPDKSITLENHRLARDTSSRVTSSSALGVTESQPQLKSSPTRRNSSGES-EPTNWFNQSNRNPAAAFHDESHIMEVDPPFYQKETDSSNEESRYPPGRNPV 127 FRQ
Asub_frq --------------MASEAYLRLPQPRRPAAGRSVSLRHHKEISPPESKITRSTQTEASSGSPSSNKPNVSKASSGESSNADTWFAGANNK---PDVKNNTVVDNDPPFFLQHS-SSEETPNYGGPGVML 112 FRQ
Anam_frq ------------------------HPRRPPAQRSVSLRHYNDASLAP-KNTKSSQTEASSGSPSSNKPNVSKADSGESSNADKWFDGANNN---ADGKNISALDNEPPFFLQHS-SSEETPNHGGQGAIL 101 FRQ
Apul_frq MTLPRRYLFDTAASMASEAYLRPPHPRRPTAQRSVSLRHSR-PSPDS-KDTRSSQTEASSGSPSSNKPNVSKADSGESSNADKWFEGANNN---ADGKNNTLGDNDPPFFLQNS-SSEETPNYLGPSAML 124 FRQ
Amel_frq --------------MASEAYLRPPHPRRPPAQRSVSLRHTSGPSPDS-KNSKSTQTEASSGSPSSNKPNVSKADSGESSNADKWFDGANNN---ADGNNSTVIDNDPPFFLQHS-SSEETPNYGGPGAML 111 FRQ
***... :*::*.: : : *: .: ..*. :.. . : .**** :. .** :*.: . .: : :***: :.: **:* ..:
Ncra_frq HPPGGVQLPGFRPVAAHSSAADDYRSVIDDLTVENKRLKEELKRYKQFGSDVMRKEKLFEIKVHGLPRRKKRELEATLRDFAASLGDSSESTSQRRKTGRHGTAVHSSGVSLSKHDSSSSSRSRPVDSAY 257 FRQ
Asub_frq KQGVPVHALLQKNDTEDSGSSGDFRAVIDDLTVQNKKLKRRLKKYEKLHDAHLKDEKLFEVRVHGLSSNKRRELEDILRNFAVGAAAQPSATTASQTTNLYERVVP----TLKTHKTASSSSNFADSAYV 238 FRQ
Anam_frq EQQVPMHALMRKNDTEDSGSS-DFRAVIDDLTVQNKKLKRRLKKYEKLHDAHLKDEKLFEVRVHGLSSTKRRELEDILRNFAVSAAGQTNAVSASQASNPYDRAVP----TLKTHKTASSSSNFADSAYA 226 FRQ
Apul_frq EQSMPMHALLHKNDTEDSGSS-DFRAVIDDLTIQNKKLKKRLKKYEKLHDAHLKDEKLFEVRVHGLSSNKRRELEEILRTFAVGAAGQP-SGSASQTSNLYDRVVP----TLKTHKTASSSSNFADSAYA 248 FRQ
Amel_frq DSHIPMHALMQKNDTEDSGSS-DFRAVIDDLTVQNKKLKRRLKKYEKLHDAHLKDEKLFEVRVHGLSSAKRRELEDILRNFAVNVAGQANAGPTSQSSNLYDRGVP----TLKTHKTASSSSNFADSAYA 236 FRQ
:. :: : : .*.:: *:*:******::**:**..**:*::: ::.*****::****. *:**** ** **.. . .. : . : :. : * :*..*.::*** . . .:
Ncra_frq NSMSTGRSSHAPHSSGPSLGRPSLTRAKSVGTQKVENYLRDTPDGLLPHH-IVMTDKEKKKLVVRRLEQLFTGKISGR----NMQRNQSMPSMDAPLAPEGTNMAPPRPPPEGLREACIQLQDGDNPRKN 382 FRQ
Asub_frq SNSASASAT--SNSNSGQNSRTPYRRSNQSRTTNIQTYLHDIPEGLLPQHPAAMTEYSKKKLVVRRLEQIFAGTGAGLGDHHHPMQQQEVSQMAAKADRSALEATGQSAKTEGNREAPIMKDDEDRSAEE 366 FRQ
Anam_frq SNSASASASGTSNSTS-LQSRHPYRRSSKARTSNIQTYLHDIPEGLLPQHPAAMTEYSRKKLVVRRLEQIFAGTGAGIGDHHHPIQQQEVSQMAAKADRSALEATGQTAKIEGIREAPIMKDDEDRSAED 355 FRQ
Apul_frq SNSASASASGLSNSNSGQQSKHSFRRSNKSRQSNIQTYLHDIPEGLLPQHPAVMTEYSKKKLVVRRLEQIFAGTGAVLGDHHHPIQQQEVSQMAARADRSALEANGQTAKIEGNREAPIMKDDEERSAQD 378 FRQ
Amel_frq SNSASASASGTSNSNSGQQSRHPYRRSSKTRTNNIQTYLHDIPEGLLPQHPAVMTEYSKKKLVVRRLEQIFAGTGAGMGDHHHPMQQQEVSQMAARADRSALEATGQTAKTEGTREAPIMKDDEDRSAEE 366 FRQ
.. ::. :: .:*.. .: . *:.. :::.** * *:****:* .**: .:**********:*:*. : : ::*.:..* * . : . ** *** * :* :.. :
Ncra_frq RSSKDNGSASNSGGDQTELGGTGTGSGDGSGSGGRTGNNTSPPGAIAPDQRPTRPRDLDPDRVQIPSENMDYIRHLGLVSPEFLQGSRTSYQDVAPDAEGWVYLNLLCNLAQLHMVNVTPSFIRQAVSEK 512 FRQ
Asub_frq SPMHQSGLEITQDTQADQKT---DSAGD------------------SPQQRPTRPLDLDPHRAQNPSENFQYIRHLGFSPPE------PSAMKSPEEGHGWIYLNFLFNMAQLHTLNVTPEFAKKALMDF 469 FRQ
Anam_frq A----SGPEIAQGTELE------QKSGL------------------SPQQRPTRPLDLDPHRAQNPRDNFQYIRHLGFSPPE------PTTMQAHEEGHGWIYLNFLFNMAQLHTLNVTPEFAKKALLDF 451 FRQ
Apul_frq SPEHSSGPEVTQGIEPSLKVVEQDFAGV------------------SPQQRPTRPLDLDPHRAQNPRDNFQYIRHLGFSPPE------PSTMEAQEGGHGWIYLNFLFNMAQLHTLNVTPEFAKKALIDF 484 FRQ
Amel_frq A----SGPEVTQGADGNSNVVEKDFAGL------------------SPQQRPTRPLDLDPHRAQNPRDNFQYIRHLGFSPPE------PSTMQAHEEGHGWIYLNFLFNMAQLHTLNVTPEFAKKALLDF 468 FRQ
: .* .. : :* :*:****** ****.*.* * :*::******: .** . . ..**:***:* *:**** :****.* ::*: :
Ncra_frq STKFQLSADGRKIRWRGGTDGTKFSSDSSEDKSQQSPMTEDTEDGSDKNGRRKKRKTQQASSEIGRFGPSRSPSDTFHYKPMFVHRNS-SSIETSLEESMSQGSEDAVDESNMGNSKWDFSGSGTTQQRR 641 FRQ
Asub_frq STKFELSEDGRKVRWKGGRS----TTRSASDLDGSSPSTYGNSPNGPSSQKRSKSSHHRAGAKSAKRRMLDKQENKFAYTPLFFHRSSEDDSDISSEEEDDTESQFLAPPPGGDSSAMTSSGIRTVSLRQ 595 FRQ
Anam_frq STKFELSEDGRKVRWKGGRT----ITRSASDTDGSSPSTYGNSFNGTSPQKRSKSSHHNAGAK--KRRTMEKQDSKFAYTPLFFHRTSEDDSDVSSEE-DETDSQFLAPP-GGDSSAMTSSGIRTVSLRQ 573 FRQ
Apul_frq STKFEISEDGRKVRWKGGRN----ITRSASEAD-SSPSTYGNSPYDKSPLKRSKSSHHKHGGKDSKRRMLEKQDSRFAYTPLFYHRSSEDDSDMSSSE-DETESPFVGPP-GGDSSAMTSSGIRTVSFRQ 607 FRQ
Amel_frq STKFELSEDGRKVRWKGGKT----ITRSASDTDGSSPSTYGNSPNGTSPQKRSKSSHHKAGAKSAKRRLLQQQDSKFTYTPLFFHRSSEDDSDLSSEE-DETESQFLAPP-GGDSSAMTSSGIRTVSLRQ 592 FRQ
****::* ****:**:** : *:.: . .** * ... . . :*.* . :. ..: : . .. * * *:* **.* .. : * .* . * . ..* ** *.. *
Ncra_frq ---KRRYDGAIVYYTGAPFCTDLSGDPGDMSPTAQMTAGREVEGSGSGDEVEHVLQRTLSGSSLPIRPLSDDRARVAEVLDFDPGNPPELVADDGSSPNDEDFVFPWCEDPAKVR---IQPIAKEVMEPS 765 FRQ
Asub_frq KKKAATDNGPIIFYNNARFCTDLSGEP------------KTEATMMYNPILYHTTTDHALGIPSVPQAD-HGVLESRGPLDQAKDLPEAMCLNDNPIPEALELNFPGTSPLSSISGASGPARSPIDLEVS 712 FRQ
Anam_frq --KKKTDNGPIIFYNNAKFCTDLSGEP------------KTEAAMMYNPILYHTTTEHALGIPRPSEASATGVMESRGPLDEAKDLPEAMCLDDNPIPEALEINFPGTTPLSDATGASGPARNPIDLEAS 689 FRQ
Apul_frq Q-KKKTDNGPIIFYNNARFCTDLSGES------------TTEVDMTNNMLMYHPMTDHALGIPKSPEPAPKDVLEHRGPLNNAKDLPEAMSLNDNPIPEALEVSFPSVSPMSQAG----PTRSPIALEAS 720 FRQ
Amel_frq --KKKTDNGPIIFYNNAKFCTDLSGEP------------KTEAAMMYNPILYHTTTEHALGVPRPSEASQQDIMESRGPLDEAQDLPEAMSLDDNPIPEALELNFPSTSPLSDASGASGPARDQIELEVS 708 FRQ
: :* *::*..* *******:. . : * * . .. . . *: . * : :*.. *: :. ** :. . :*
Ncra_frq GLGGVLPDDHFVMLVTTRRVVRPILQRQLSRSTTSEDTAEFIAERLAAIRTSSPLPPRSHRLTVAPLQVEYVSGQFRRLNPAPLPPPAIFYPPFSTDSSWDDGDDLASDDEEVEEVEEDSYSEGQISRRA 895 FRQ
Asub_frq GIGGIYPSDNFSINVKTE------------RKR-TASCAEYVEKKPYAPRIAELFKD--SKQQSASYKEDVVKTFHQELPPSELPPAFCFMDVDEYDDDESDSGDYQSIIPDMDRIHDVPATAPQTIDMP 827 FRQ
Anam_frq GIGGIYPSDNFSVNVKTE------------RKRNHAAMAQPRQQKPYSARIAGLLKE--RKQKAILFEDDVVSTFHQELPPSELPPASCFMDIDEYDDDESEFEDYQSIMPDLDRVHDVPATAPQTIDMP 805 FRQ
Apul_frq GIGGICPSDNFLINVRTE------------HKRVYGAPIQPAPKKAYPAHIASLFKESGRQQQQTPFTDYVVKTFHQELPPSELPPASCFMDVDEFDDDESEFGDYQSIVPEMDRMHDVPSTAPQTIDMP 838 FRQ
Amel_frq GIGGIYPSDNFSVNVKME------------RKRNPTSAAPPVQPKSYSPKIAGLLKE--NKQQPAVFTEEVVGTFHQELPPSELPPASCFMDIDEYDDDESEFEDYHSMIPDVDRVHDVPATAPQTIDMA 824 FRQ
*:**: *.*:* : * . :. : . : : : : * .:.* *: ***. * . *.. .: * * :::.:.: : *
Ncra_frq NPHFSDNNTYMRKDDLAFDTETDVRMDSDDNRLSDSGHNMRAMMPRAEAVDGDDSPLAAVTGKEVDMLHTGSSVATAGGAESGYSSSMEDVSSS------------------------------------ 989 FRQ
Asub_frq ---------YMSSDESGDEAAEDED-DDDAASDGSLDLLATARKLDPHSIQAREREYDAHMAERLAEEIPAGSSAATAGGGSGFASPVAGISRKEYEAARKEHARRHASTIASVASFARTDTNGSMVVNG 947 FRQ
Anam_frq ---------YLSSDDSDDDDDEEGDKDDDAASDGSLDLLATARELDPQSIQAREREYDAHMAERMAEEIPAGSSAATAGGGSGFASPA------------------------------------------ 884 FRQ
Apul_frq ---------YLSSDESGEEEDEE---DDDAASDGSLDLLATARKLDPQSVQAREREYDAHMAERLAEEIPAGSSAATAGGGSGFASPIAGISRKEYEAAKAEHMKRHASTIASAVSIPRTETNESMIVNG 956 FRQ
Amel_frq ---------YMSSDESDDEDDEEGDKDDDAASDGSLDLLATARELDPQSIQAREREYDAHMAERLAEEIPAGSSAATAGGGSGFASPAAGISRKDYEDARAEHAMRHASTITSVASFNRTDTNGSMVVNG 945 FRQ
. *: .*: : : *.* .. . * ..: :. : * .:.: ...* *::.*. **::*.
Ncra_frq --- 989
Asub_frq KSP 950
Anam_frq --- 884
Apul_frq QSP 959
Amel_frq KSP 948
Input files: MFA/Ncra.CLOCK.v02.Aure.frq.aln (alignment), ALN//Ncra.CLOCK.v02.Aure.frq.dom.rgns (regions: exons, domains, low-complexity, etc)
5 sequences, alignment length = 1170
sequence lengths:
989 Ncra_frq
950 Asub_frq
884 Anam_frq
959 Apul_frq
948 Amel_frq
| # | domain |
Ncra_frq | Asub_frq | Anam_frq | Apul_frq | Amel_frq |
|---|
| 1 | FRQ | 1 11..984
| 1 4..905
| 1 0..883
| 1 16..914
| 1 5..903
|
| |
ARC.colors file was not found, using default colors.
Alignment Regions Colorize, ARC v061