frh
Ncra_frh MDDLFEVFEEQPRAQKKRKASPDVEMADGAAAAAPVANAAAAVTHPQAQAAPAPQKDNIDNNDNNNNNTTTSAVQPTIPNGDAAAAADDVQSPQSPHGLGDNKRRKKTDEAEPIMTDAFQTAESREVTGA 130
Asub_frh MDDLFDVFDDSP-------SNQNLNVAKEKPSKKRSANGDVKTPEPPTASQD---TPIPDANDEDH--------------GVPVSADPETPAPAS------EPKRQRRDEPAPVVTDSFETEQSREIAAA 100
Anam_frh MDDLFDVFDDAP-------PTKNALVANDKSSKKRSANGHVKTPEPTTVNQDAA-TPAADDNDEDQ--------------GVPVSSEPETAAPAS------ESKRQKRDEPAPVVTDSFETEQSREVAAA 102
Apul_frh MDDLFDVFDDAP-------PNKNLDVAKEKPSKKRSANGHVKTPEPAAATQD---TTIADANDEDQ--------------GVPVPAEPQSPAPAS------ETKRLKRDEPAPVVTDSFETEQSREVAAA 100
Amel_frh MDDLFDVFDDAP-------PSKNTDIANDKPTKKRSANGHVKTPEPTSTNQDSA-TPAADPNDEDH--------------GVPVPAESDIPATTS------ESKRQKRDEPAPVVTDSFETEQSREVAAA 102
*****:**:: * .. : :*. .: **. . ...* : . **::: * ...: : :. * : :* : **. *::**:* * :***::.
Ncra_frh QGFAPTEGES-IVLSHNIQHQVALPPDLDYEYIPLSEHKPP-AEPARTYSFKLDPFQALSVASIEREESVLVSAHTSAGKTVVAEYAIAQCLKKNQRVIYTSPIKALSNQKYRDFQAEFGDVGLMTGDVT 258 T2SE DEAD
Asub_frh AGLQASKEEANVVLSHQVRHQVALPP--DYDYIPISQHKPPPNGPAKTYPFTLDPFQQVSIASIERNESVLVSAHTSAGKTVVAEYAVAQCLRENQRVIYTSPIKALSNQKFREFQAEFGDVGLMTGDVT 228 DEAD
Anam_frh AGLQASKEEANVVLSHQVRHQVALPP--DYDYIPISQHKPPPNGPAKTYPFTLDPFQQVSIASIERNESVLVSAHTSAGKTVVAEYAVAQCLRENQRVIYTSPIKALSNQKFREFQAEFGDVGLMTGDVT 230 DEAD
Apul_frh AGLQASKDEANVVLSHQVRHQVALPP--DYDYIPISQHKPPPNGPAKTYPFTLDPFQQVSIASIERNESVLVSAHTSAGKTVVAEYAVAQCLRENQRVIYTSPIKALSNQKFREFQAEFGDVGLMTGDVT 228 DEAD
Amel_frh AGLQASKDEANVVLSHQVRHQVALPP--DYDYIPISQHKPPPNGPAKSYPFTLDPFQQVSIASIERNESVLVSAHTSAGKTVVAEYAVAQCLRENQRVIYTSPIKALSNQKFREFQAEFGDVGLMTGDVT 230 DEAD
* *: .:: *: :****:::******* **:***:*:**** **::* *.***** :*:*****:********************:****::*************** *:*:***************
Ncra_frh INPTASCLVMTTEILRSMLYRGSEIMREVAWVVFDEIHYMRDKIRGVVWEETIILLPDKVRYVFLSATIPNAFQFAEWIAKIHRQACHVVYTDFRPTPLQNYFFPAGGKGILLIVDEKGNFKENNFNQAM 388 DEAD
Asub_frh INPTATCLVMTTEILRSMLYRGSEIMREVAWVIFDEVHYLRDKSRGVVWEETIILLPDKVHYVFLSATIPNSMQFAEWITKTHNQPCHVVYTDFRPTPLQHYLFPAGAEGIHLVVDEKGAFREENFQKAM 358 DEAD
Anam_frh INPTATCLVMTTEILRSMLYRGSEIMREVAWVIFDEVHYLRDKSRGVVWEETIILLPDKVHYVFLSATIPNSMQFAEWITKTHNQPCHVVYTDFRPTPLQHYLFPAGAEGIHLVVDEKGTFREENFQKAM 360 DEAD
Apul_frh INPTATCLVMTTEILRSMLYRGSEIMREVAWVIFDEVHYLRDKSRGVVWEETIILLPDKVHYVFLSATIPNSMQFAEWITKTHNQPCHVVYTDFRPTPLQHYLFPAGAEGIHLVVDEKGTFREENFQKAM 358 DEAD
Amel_frh INPTATCLVMTTEILRSMLYRGSEIMREVAWVIFDEVHYLRDKSRGVVWEETIILLPDKVHYVFLSATIPNSMQFAEWITKTHNQPCHVVYTDFRPTPLQHYLFPAGAEGIHLVVDEKGTFREENFQKAM 360 DEAD
******:**************************:***:** *** ****************:**********::******:* *.*.************* :*:****.:** *:***** *:*:**::*
Ncra_frh AMIEEKKGTDSNDWSAKQKGKGKNKKTNKGGEAADEKADIAKIIKMILKKNFQPVIVFNFSKRECEQMALASSSMKFNAPDEENMVNKVFENALASLSEDDKNLPQISNILPLLRKGIGVHHSGLLPILK 518 DEAD Helicase_C
Asub_frh ATIADKAGDDGSDPLAKRKGKGNNKKVNKGG-RKEGPSDIYKIVKMIMMKNYNPVIVFSFSKRDCENYALQMSQLAFNDDNEKAMVKKVFESAIEMLSPEDRELPQIQHLLPLLRRGIGIHHSGLLPILK 487 DEAD Helicase_C
Anam_frh ATIADKAGDDGSDPMAKRRGKGKDKKVNKGG-RKEGPSDIYKIVKMIMMKNYNPVIVFSFSKRDCENYALQMSQLAFNDDNEKAMVKKVFESAIEMLSPEDRELPQIQHLLPLLRRGIGIHHSGLLPILK 489 DEAD Helicase_C
Apul_frh ATIADRAGDDGSDPMAKRRGKGKDKKVNKGG-RKEGPSDIYKIVKMIMMKNYNPVIVFSFSKRDCENYALQMSQLAFNDDNEKAMVKKVFESAIEMLSPEDRELPQIQHLLPLLRRGIGIHHSGLLPILK 487 DEAD Helicase_C
Amel_frh ATIADKAGDDGSDPMAKRRGKGKDKKVNKGG-RKEGPSDIYKIVKMIMMKNYNPVIVFSFSKRDCENYALQMSQLAFNDDNEKAMVKKVFESAIEMLSPEDRELPQIQHLLPLLRRGIGIHHSGLLPILK 489 DEAD Helicase_C
** * :: * *..* **::***::**.** * : :** **:***: **::*****.****:**: ** *.: ** :*: **:** *.*: ** :*::****.::*****:***:*********
Ncra_frh ETIEILFQEGLIKVLFATETFSIGLNMPARTVVFTQVTKWDGQQRRPLTSSEYIQMAGRAGRRGLDDRGIVIMMVDDKLEPETARAIVVGNQDKLNSAFHLGYNMVLNLLRIEAISPEYMLERCFFQFQN 648 Helicase_C rRNA_proc-arch
Asub_frh ETIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTSVRKFDGVAERWVTPSEFIQMSGRAGRRGLDERGIVIMMIDEKMDPAVAKEVVRGEQDKLNSAFYLGYNMILNLMRVEGISPEFMLERCFYQFQN 617 Helicase_C rRNA_proc-arch
Anam_frh ETIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTSVRKFDGVAERWVTPSEFIQMSGRAGRRGLDERGIVIMMIDEKMEPAVAKEVVRGEQDKLNSAFYLGYNMILNLMRVEGISPEFMLERCFYQFQN 619 Helicase_C rRNA_proc-arch
Apul_frh ETIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTSVRKFDGVAERWVTPSEFIQMSGRAGRRGLDERGIVIMMIDEKMEPAVAKEVVRGEQDKLNSAFYLGYNMILNLMRVEGISPEFMLERCFYQFQN 617 Helicase_C rRNA_proc-arch
Amel_frh ETIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTSVRKFDGVAERWVTPSEFIQMSGRAGRRGLDERGIVIMMIDEKMEPAVAKEVVRGEQDKLNSAFYLGYNMILNLMRVEGISPEFMLERCFYQFQN 619 Helicase_C rRNA_proc-arch
******************** *********:*****.* *:** .* :*.**:***:*********:*******:*:*: * .*: :* *:********:*****:***:*:*.****:******:***
Ncra_frh AASVPQLERELISLQQERDAIIIPDESIVKDYYGVRQQLEEYNKDMVFVIQHPQNCLGFFQEGRLIHIKSPSGVDYGWGVLIKHIQRQTPKNGQPP--YPEQESYVLDVLLKVSGDFN-PKTRGEGPMPE 775 rRNA_proc-arch
Asub_frh TASVAGLEKQLLELEQERNHMSIEDEPTIKDYYDLRTQLNNYAKDMRDVVNHPQHCLQFLQSGRLVRIKHN-DHDFGWGAVVNFAKCRPPK-GQPVQDPPNASSYVVDVLLQVASDVTVPANKNNDELPS 745 rRNA_proc-arch
Anam_frh TASVAGLEKQLLELEQERNHMSIEDEPTIKDYYDLRTQLNNYAKDMRDVVNHPQHCLQFLQSGRLVRIKHN-DHDFGWGAVVNFAKCRPPK-GQPVQDPPNASSYVVDVLLQVASDVTVPANKNNDELPP 747 rRNA_proc-arch
Apul_frh TASVAGLEKQLLELEQERNHMNIEDEPTIKDYYDLRTQLNNYAKDMRDVVNHPQHCLQFLQSGRLVRIKHK-DHDFGWGAVVNFAKCRPLK-GQPVQDPPTASSYVVDVLLQVASDVNVPANKNNDELPP 745 rRNA_proc-arch
Amel_frh TASVAGLEKQLLELEQERNHMSIEDEPTIKDYYDLRTQLNNYAKDMRDVVNHPQHCLQFLQSGRLVRIKHN-DHDFGWGAVVNFAKCRPPK-GQPVQDPPNASSYVVDVLLQVASDVTVPANKNNDELPP 747 rRNA_proc-arch
*:***. **: *:.*:***: : * **. :****.:* **::* *** *::***:** *:*.***::** . *:***.:::. : :. * *** * .***:****:*:.*.. * .:.:. :*
Ncra_frh GIMPAGKDSKNARWEVVPCLLNCLRALGQLRVFLPKRLESADEKDGVGKAVDEISRRFPDGIPILDPMENMGINDDSFKKLLRKIEVLESRLVANPLHNSPLLVELWNQYSLKMQLGEQIKEKKKAIARA 905 rRNA_proc-arch
Asub_frh GVRPPVAGEK-GKMEVVPVLLSTVDAIGHLRIFLPTDLRSPDQRNNVRKGLEEVKRRFPDGIAILDPVENMGITDEGFKKLLRKIEILESRLLSNPLHNSPRLADLHTQYEHKVQLGNKIKDVRKQINDA 874 rRNA_proc-arch
Anam_frh GVRPPMAGEK-GKMEVVPVLLSTVDAIGHLRIFLPTDLRSPDQRNNVRKGLEEVKRRFPDGIAILDPVENMGITDEGFKKLLRKIEILESRLLSNPLHNSPRLAALHTQYEHKVQLGNKIKDVRKQISDA 876 rRNA_proc-arch DSHCT
Apul_frh GVRPPMAGEK-GKMEVVPVLLSTVDAIGHLRIFLPTDLRSADQRNNVRKGLEEVKRRFPDGIAILDPVENMGITDEAFKKLLRKIEILESRLLSNPLHNSPRLADLHTQYEHKVQLGNKIKDVRKQISDA 874 rRNA_proc-arch
Amel_frh GVRPPVAGEK-GKMEVVPVLLSTVDAIGHLRIFLPTDLRSPEQRNNVRKGLEEVKRRFPDGIAILDPVENMGITDEGFKKLLRKIEILESRLLSNPLHNSPRLAALHTQYEHKVQLGNKIKEVRKQISDA 876 rRNA_proc-arch
*: *. ..* .: **** **. : *:*:**:***. *.*.::::.* *.::*:.**** **.****:*****.*:.*********:*****::******* *. * .**. *:***:: *: :* *
Ncra_frh HSVAQLDELKSRKRVLRRLGFINDAEVVQMKARVACEISSTEGHELLLAELLFNRFFNELSPEICACILSCFIFDEK-IETQALKEELAKPFREIQAQARIIAKVSAESKLDVNEDEYVQSLKWQLMETV 1034 DSHCT Prp19 T2SE rRNA_proc-arch
Asub_frh MSVLQMEELKHRRRVLRRLGFISEADVVQLKARVACEIST--GDELVLSELLFNRFFNELTPEQCAAALSCFIFEEKSNETPSLKEELAKPFREIQAQARTVAKISQECKLPVNEDEYVEGFKYQLMEVV 1002 DSHCT
Anam_frh MSVLQTEELKHRRRVLRRLGFINEADVVQLKARVACEIST--GDELVLSELLFNRFFNELTPEQCAAALSCFIFEEKSNETPTLKEELAKPYREIQAQARTVAKISQESKLAVNEDEYVDGFKYQLMEVV 1004 DSHCT
Apul_frh MSVLQMEELKHRRRVLRRLGFISESDVVQLKARVACEIST--GDELVLSELLFNRFFNELTPEQCAAALSCFIFEEKSNETPTLKEELAKPYREIQAQARTIAKISQESKLAVNEDEYVDGFKYQLMEVV 1002 DSHCT
Amel_frh MSVLQMEELKHRRRVLRRLGFINEADVVQLKARVACEIST--GDELVLSELLFNRFFNELTPEQCAAALSCFIFEEKSNETPTLKEELAKPFREIQAQARTVAKISQESKLAVNEDEYVEGFKYQLMEVV 1004 DSHCT
* ** * :*** *:*********.:::***:*********: *.**:*: **********:** **. ******:** ** :********:******** :**:* *. * *******:.:*:****.
Ncra_frh LAWAQGRPFSEICKMTNVYEGSLIRLFRRLEELLRQMAEAARVMGSEELKDKFELSLSKIRRDIVSFNSLYL 1106 rRNA_proc-arch DSHCT
Asub_frh YKWCNGATFAEICKMTDVYEGSLIRLFRRLEELLRQMAQASKVMGSEELEQKFEVALTKVRRDIVAAQSLYL 1074 DSHCT rRNA_proc-arch
Anam_frh YKWCNGATFAEICKMTDVYEGSLIRLFRRLEELLRQMAQASKVMGSEELEQKFETALTKVRRDIVAAQSLYL 1076 DSHCT rRNA_proc-arch
Apul_frh YKWCNGATFAEICKMTDVYEGSLIRLFRRLEELMRQMAQASKVMGSEELEQKFETALTKVRRDIVAAQSLYL 1074 DSHCT rRNA_proc-arch
Amel_frh YKWCNGASFAEICKMTDVYEGSLIRLFRRLEELLRQMAQASKVMGSEELEQKFETALTKVRRDIVAAQSLYL 1076 DSHCT rRNA_proc-arch
* *.:* .*:******:****************:****: ::*******::*** :*:*:*****: :***
Input files: MFA/Ncra.CLOCK.v02.Aure.frh.aln (alignment), ALN//Ncra.CLOCK.v02.Aure.frh.dom.rgns (regions: exons, domains, low-complexity, etc)
5 sequences, alignment length = 1170
sequence lengths:
1106 Ncra_frh
1074 Asub_frh
1076 Anam_frh
1074 Apul_frh
1076 Amel_frh
| # | domain |
Ncra_frh | Asub_frh | Anam_frh | Apul_frh | Amel_frh |
|---|
| 1 | DEAD | 1 181..332
2 368..394
| 1 151..302
2 338..368
| 1 153..304
2 339..371
| 1 151..302
2 337..370
| 1 153..304
2 339..371
|
| 2 | DSHCT | 1 926..1105
| 1 895..1073
| 1 858..888
2 897..1075
| 1 895..1073
| 1 897..1075
|
| 3 | Helicase_C | 1 500..581
| 1 468..550
| 1 470..552
| 1 468..550
| 1 470..552
|
| 4 | Prp19 | 1 646..697
2 970..1023
| 0 | 0 | 0 | 0 |
| 5 | rRNA_proc-arch | 1 635..904
2 1003..1092
| 1 604..873
2 1014..1063
| 1 606..875
2 1020..1065
| 1 604..873
2 1017..1063
| 1 606..875
2 1016..1065
|
| 6 | T2SE | 1 164..229
2 975..1033
| 0 | 0 | 0 | 0 |
| |
ARC.colors file was not found, using default colors.
Alignment Regions Colorize, ARC v061