fl
Ncra_fl MPRQHLTPNACLVCRKKRTKCDGQMPCRRCRSRGEECAYEDKKWRTKDHLRSEIERLRNEQRQGHAVIRALINDEQDWESFLSRIRGDESPEAIADWIRSIRNLFEPLQAASSQSMGGLGAPPTLLSPSQ 130 Zn_clus
Asub_fl MPPRTILPKDEQGSRDDSASMAPPKSAKRKAVSSACIPCRKRKSKCDGGLP--------SCSTCLAVYRTDCSYDQDTD---HRRKG-----ALRKDIASLQNKNTALDVVINSLCALPEHEAIALFHSL 114 Zn_clus
Anam_fl MPPRTILPKDEQGSSDGLASMAPPKSAKRKAVSSACIPCRKRKSKCDGGLP--------SCSTCMAVYRTDCSYDQDTD---HRRKG-----ALRKDIASLQNKNTALDVVINSLCALPENEATSLFHSL 114 Zn_clus
Apul_fl MPPRTILPKDEQGSREGSASMAPPKSAKRKAVSSACIPCRKRKSKCDGGLP--------SCSTCLAVYRTDCSYDQDTD---HRRKG-----ALRKDIASLQNKNTALDVVINSLCALPEHEATALFHSL 114 Zn_clus
Amel_fl MPPRTILPKDEQGSSDGLASMAPPKSAKRKAVSSACIPCRKRKSKCDGGLP--------SCSTCMAVYRTDCSYDQDTD---HRRKG-----ALRKDIASLQNKNTALDVVINSLCALPEHEATALFHSL 114 Zn_clus
** : : *: . . :. ..:* . . ..:* : .. * ** *: . :** : * :* *: . * *::* .*:.. .. . . * *
Ncra_fl ATASESSQLHRAASFAGIGSYNFGQGRVPFDQSTPRSSFSSDLSPTTPFSFREQADFIHAPQPMYPSSRRFSSSSLPSLPLRHSSQPLVPGIFNEPLPHTWTSITSDTQLVQRLLSRFFSAPCSLLCFIP 260
Asub_fl RRGERLDNLAEAINAGDTEKLRTLDTDLSGP--TPGATFHTQVPSTRNESSRS------------PVDGKWNDAGSQSAAAEGSS--------------SWFRIPQDAEFVDHLLNLYFCWSHPFFCFFS 216
Anam_fl RRGERLDCLAEAINAGDTEKLRTLDTELSGPSGTPGATFHTQAPSTRNESSRS------------PVDGKWNDAGSQSAAAEAPS--------------SWFRIPQDAEFVDHLLNLYFCWSHPFFCFFS 218
Apul_fl RRGERLDSLAEAINAGDTEKLRTLDTDLSGPSGTPGATFHTQAPSTRNESSRS------------PIEGEWHKPGNQSAAAEGSS--------------SWFRIPQDAEFVDHLLNLYFSWSHPFFCFFS 218
Amel_fl RRGERLDSLAEAINAGDTEKLRTLDTDLSGPSGPPGATFHTQAPSTRNESSRS------------PTDAKWNDAGNQSAVTEGSS--------------SWFRVPQDAEFVDHLLNLYFSWSHPFFCFFS 218
... . * .* . .. . . : :. .* ::* :: ..* *. * . .: ... * . .* :* :..*:: *::**. :*. . .::**:
Ncra_fl QSSFMKAFREGDSRYCSEALVNAILGKACKSYGTASNIVSRMAFGDAFIGEAKRLLATEPNHTNLPSTQALAVLALAEISEGKDDEAWDLAWASVRAAITR--------EQSFHVDQEFATARAVSYCGG 382
Asub_fl KDHFLRDMSRGSTKYCSAMLVNAVLSVACQYSDRP---AARERAGDYFFSEAQRLSECIG-ASELTAVQAMAVMAVREGSAGRDHISFRLIGRAVRLAMEMGLHLADTTAGEPNFRSSELDIRKLTFWGV 342
Anam_fl KDHFLRDMARGSTKYCSAMLVNAVLSVACQYSDRP---AARERAGDYFFGEAQRLAENIG-AAELTAVQAIAVMAVREGSAGRDHISFRLVGRAVRLAMEMGLHLAETTAGEPNLRSSEIDIRKLTFWGV 344
Apul_fl KDHFLRDMARGSTKYCSAMLVNAVLSVACQYSDRP---AARDRGGDYFFSEAQRHAENIG-AADLTAVQAMAVMAVREGSAGRDHISYRLCGRAVRLALEMGLHLADTTAGEPNLRSSEIDIRKLTFWGV 344
Amel_fl KDHFLRDMSRGSTKYCSAMLVNAVCSVACQYSDRP---AARDRAGDYFFSEAQRLSENIG-AAELTSVQALAVMAVREGSAGRDHISYRMIGRSVRLAMEMGLHLAETTAGEPNLRSSEMDIRKLTFWGV 344
.:. *:: : .*.::*** ****: . **: . . . * ** *:.**:* ::*.:.**:**:*: * * *:*. :: : :** *: . :. .. * ::: *
Ncra_fl FTLIHMLRLLTGRLDLNTSPFFMRLYQGSEETPEDEPQNRIERGFALHMQFLAELEHCPPLPRFVFEITTAVHTFAS--YNFSNAATAEELEDAYGKCLDAYKRFEETFCLDMDTTPDLLFAQIWYHYCL 510
Asub_fl FNCEMICCLALGRVSSIPKNAIEIDKPMNSEKLDALFWQPYEDANLPVSPSAVQPMKCLLFHSVQSKLSELINDINLNLYAPRERFTPRRLASAYNQYQNWYAELPEMFQLQNTAMPHVIVLHMYYHQSV 472
Anam_fl FNCEMICCLSLGRVSSIPKNAIEIDKPMNSEKLDALFWQPYEDANLPVSPSAIQPMKCLLFHSIQSKLSEMINDINLNLYAPRERFTPRRLASAYHQYQTWYSELPEMFQLQNTAMPHVIVLHMYYHHCV 474
Apul_fl FNCEMICCLALGRISSIPKNAIEIDKPLNSEKLDALFWQPYEDANLPVSPSAVQPMKCLLFHSHQSKLAELINDINLNLYAPRERFTPRRLASAYNQYQQWYSELPDMFQLQNTAMPHVIVLHMYYHQCV 474
Amel_fl FNCEMICCLALGRPSSIPKNAIEIDKPMNSEKLDALFWQPYEDANLPVSPSAVQPMKCLLFHSIQSKLSEMINDINLNLYAPRERFTPRRLASAYHQYQMWYSELPEMFQLQNTAMPHVIVLHMYYHQCV 474
*. : * ** . .. : . *. : : * . : :* : ::: :: : * : *.. * .** : * .: : * *: : *.::. :::** .
Ncra_fl LALLRPFVKSTASLRDSAMTTPRLRNDANPSDICQRSSEAIIFLTSTYQTRFSLGNPPELLPHMLFAAVLYQVTLTPDPEHLSTIANDIKPELSESPVMMPSQAAFGAHGNSNLVPPPPMPFNNHGSYFP 640
Asub_fl LHLFRPFMKLDLSDIG-----------LYPRELATYCATEISKLMNALRGMYGLRRTSLVVSTILLSASTVHLMNLPSQGAAVQLTQAMQDLNTMSVNHRYASCCLEVINRLANQWGVRLPEGATN---- 587
Anam_fl LHLFRPFMKLDLSDIG-----------LFPRELATYCATEISKLMNALRGMYGLRRTSLAVSPIVLSASTVHLMNLPSQGAAVQLTQSMQDLDTMSVNHRYASCCLEVINRLANQWGIRLPEATAN---- 589
Apul_fl LHLFRPFMKLDLSDIG-----------LYPRELATYCATEISKLMNALRGMYGLRRTSLAVSPILLSASTVHLMNLPSQGAAMQLTQAMQDLDTMSVNHRYASCCLEVINRLANQWGIRLPEGTAN---- 589
Amel_fl LHLFRPFMKLDLSDIG-----------LYPRELATYCATEISKLMNALRGMYGLRRTSLAVSPILLSASTVHLMNLPSQGAAVQLTQAMQDLETMSVNHRYASCCLEIINRLANQWGIRLPEATAN---- 589
:* *:***:* * . * ::. .: * * .: : :.* ... :. ::::* :: *. ::: :: : * :...: .. :* .
Ncra_fl QPLSPVLKLEVRQAAPRRESSISLSSTFDSCGNRRPSDSFTSSTLTSHDASERESSTSDTQSDFLPFFTSEPADLVTIGSLQLASMQHHGAVEATRLLRSLSTVKDLVGSTLDLETLAEALPFPMGDLNT 770
Asub_fl --LAPFRSPDLDQAMPN------MSLFFT-------QATLSNESMESLVAPPTHNLRHDSGSMFEPSFAPHNMPILPTPSQSSLSANSQHSMHSTPMNTTPVQTQSNMWSTFSSQQMSAPMQLQLPTADF 702
Anam_fl --LAPFRSPDINQAVPN------MALFF------------------------------------------------------------------------------------------------------ 609
Apul_fl --LAPFRSPEPDQAMPN------MSLFFT-------QATLSNESMESLVAPPSNNLRHDSGSMFEPSFAPHNMPILPTPSQSSLGSTSQHSMHSTPMNTTPVQAQSNMWTTFPSQQMSAPMHIQLPPGDF 704
Amel_fl --LAPFRSPEPGQAMPN------MSLFFT-------QATLSNESLESLVAPPTQNLRHDSGSMFEPSFAPHNMPILPTGSQSSLGATSQHSMHSTPMNTTPVQAQSAMWPSFPPQQMSTPMQIQLPPTDF 704
*:*. . ** *. :: *
Ncra_fl AVLYTGLGLQRAPVEPMQVTGP 792
Asub_fl QMMNVDPSGSYGYQNFQQSQ-- 722
Anam_fl ---------------------- 609
Apul_fl GMMNVDHQTAFGYQAYQPPQ-- 724
Amel_fl PMLNVDSSASFGYQNYQQPR-- 724
Input files: MFA/Ncra.CLOCK.v02.Aure.fl.aln (alignment), ALN//Ncra.CLOCK.v02.Aure.fl.dom.rgns (regions: exons, domains, low-complexity, etc)
5 sequences, alignment length = 910
sequence lengths:
792 Ncra_fl
722 Asub_fl
609 Anam_fl
724 Apul_fl
724 Amel_fl
| # | domain |
Ncra_fl | Asub_fl | Anam_fl | Apul_fl | Amel_fl |
|---|
| 1 | Zn_clus | 1 8..45
| 1 33..72
| 1 33..72
| 1 33..72
| 1 33..72
|
| |
ARC.colors file was not found, using default colors.
Alignment Regions Colorize, ARC v061