dcc-1

Ncra_dcc-1      ------------------MTLQDTTKFRTSAEDVTNPCTDLPKASAFGITTTVSGDSSQLLTNLSPASGRSVPVTHLNHLQAKDR---------TKTHQLSDQTAGTQDGRPPGVWAPNSGRYGPIADKA  103   
Asub_dcc-1      MPHSKPGDGANAARAPSRATIATPDEATLAVASAINSTSSLPPSQLPRDLSTHAAHSTRPAVNLPPSGPTSSPRGSRMKRPEDNEAPTATTPDVSRMTFPSITTPTASDRPHPHSDGPTDAKKRHHPEAF  130   
Anam_dcc-1      ------------------------------------------------------------------------------------------------MPSSPAAASTAFD-LDTQLRRPPEPKKRPHPDQL  33    
Apul_dcc-1      ------------------------------------------------------------------------------------------------MRNSPTTTPTASDRLDPQNDRPTEAKKRLHPDP-  33    
Amel_dcc-1      ------------------------------------------------------------------------------------------------MPNPPTATPTASD-LDTQHHKATEDKKRSHPDP-  32    
                                                                                                                     .  :. : *   .    .   :    .: 

Ncra_dcc-1      PHEHLGALSIPPISGHSGHP---QPLATPPFEVGPGGAQLTLGKRITAEDKSELRSFDSP---SKKTLLVAHGGLHLPPPLPHTPGELVSYLPGVSSPLFFSHRARQQPPTPRMPGFFANGIAAPIMSIV  227   
Asub_dcc-1      --HHFRPP-PPPLRPPTSTPSAHLN-STPPSLTERSSVLLPPP-RPPVFQSVSSDAIDAPPVRKKPRLLPRQERFTFS-------GPSINQLQ-PPSPLFFSNSPRPRPNLP--ARFTSFEAGATMLTKA  245   
Anam_dcc-1      --HHFRPPPPPPLRPPTSSP---STTTTPPPIDTLSSASLPPPPRPPVFQSVSSDALDAPSLRKKPRLLPRHERFTFS-------GPSVNRLQ-PPSPLFFSNSPRPRPHLP--PRFTSFEAGATMLTKA  148   
Apul_dcc-1      --HQFRPP-PPITRPPTSSPSTFANTSTPPSLSKPSSISLPPP-RPPVFQSVSSDAIDAPPARKKPRLLPRHERFTFS-------GPSINRLQ-PPSPLFFSNSPRPRPHLP--PRFTSFEAGATMLSKA  149   
Amel_dcc-1      --HHFRPPPPPP-RPPTS-----AANTTPSPTDKPSSISLQPPSRPPVFQSVSSDAIDAPPLRKKPRLLPRHERFTFT-------GPSINRLQ-PPSPLFFSNSPRPRPHLP--PRFTSFEAGATMLSKA  144   
                   .:: .   *     :.        :**.     ..  *    * ..  . .  ::*:*   .*  **  :  : :.       *  :. *   .******: .* :*  *  . * :   .*.::: 

Ncra_dcc-1      QETQDGVTTLRLPKGHVIATTAQGSNRSSSTPGSWTSSESLDGTMRSLDGRPLAIVAPALQAIPATELLDQDPRPVFIVDLANPFNVSSGLLHIVYANPSLKASTSVLELLNGDTADAEADSFDFAHFKH  357    PAS_8  PAS_9 
Asub_dcc-1      NSEDTHVKTVTLARGTISTSSRRSNDGSSTAR---SSSPDLRNDFS-------------LSSIGILELLDHDARPTMIIDLADAANNADVQLRPVFTNASLRSCPDLLTALTGSAKDQDES--AFAQFKA  357   
Anam_dcc-1      NGEDSHVKTVTLARGTISNSLRRSIDRSSAGR---SASPDLRADVS-------------LNSIGILELLDHDDRPALILDLADGTNNTELSLRPVFTNRSLRSSPDLINALTGTARDHDDA--AFAQFKA  260   
Apul_dcc-1      NTEDSHVKTVTLARGTISNPLRRSIDRSSTGR---SSSPDLRGDVS-------------LNSIGIIELLDHDDRPAMIIDLTDGTNNAEGPLRPVFTNTALRSCPDLINALMGSSREQDEA--TSAQFKA  261   
Amel_dcc-1      NNEESHVKTVTLARGTISNSLRRSIDRSSTAR---SASPDLRGELS-------------LNSIGILELLDHDDRPAIIVDLADGTNTTEPSLRPIFTNRALRSSPDLLSALTGVGRDQDEA--AFAQFKA  256   
                .:  :  *.*: *.:* :  .  :. : **:     ::*  *   .              *.:*   ****:* **.:*:**::  * :.  *: :::*  *::...::  * *   : :      *:**

Ncra_dcc-1      WVMSPEANTESIRLAPTCTTFGGINWTCSTLRKRFRVVTGHSNTVSVT---------PTTPSPKTQLPPVLSRSSRGSISARELSPERGDAVDYFG--PVEEVGSPRPRSYSEPRSPS------------  464   
Asub_dcc-1      WILGCPLKDEPLTVPLPTQLYAGTSWSCSTLRKRLRIVSGASILMTSTRPSASSISRPSSSSTSTSAMSISQPSASLPGSGSALPMTLEEPDDYFGSVAPAPTSAPGPAEVSPSIIPSTESVDDKAQQAS  487   
Anam_dcc-1      WALGSQVNGEPLSVPLPTHDYAGISWFCSTLRKRLRIISGASAATTSNGALATSASRNSSSSTSTSAMSISQPSSSLPISGSALSATVEEPDDYFGSAAPAPTSAPAPAEISPSIIPSTEVVDDKARPIS  390   
Apul_dcc-1      WVLGSQVSSDPPVMPLSTHVYAGMAWSCSTLRKRLRIISGASAVASSAGLPAASLRRHSSNSTSTSAMSLSQPSASLPISGSVLPTTLEEPDDYFGSAVP-PTSAPATAEISPSVIPSTETIDDKSQEPS  390   
Amel_dcc-1      WVLGSQASGEPLSVPLPTHVYAGTSWSCSTLRKRLRIISGASAALTSNGALATSASRHSSNSTSTSAMSIPQSSSSLPISSSALPATVEEPDDYFGSAAPAPTSAPAPAEISPSIIPSTEAADVKAQSTW  386   
                 * :.   . :.  :. .   :.*  * ** ****:*:::* *   :            :: *..*.  .: . *:  . *.  *.     . ****      ..:* . . * .  **           

Ncra_dcc-1      ------------------RTIIDTSLAGLNELPMVIPMS--------------QVYTTFDWTRIPVDDPNLGPHHRFARSVDWASTPLGPVEEWPADLRIMSNMIMGSPHPAALYWGEEFVAIYNEAYIA  562    PAS  PAS_4  PAS_9 
Asub_dcc-1      PHSSLPGFDNISPLGIRDIALPDIQSSLVHEQVSRAQTASNVDWLESPSTGLYQEGHSFDWTRLPVTDS-MPSHIRFARSIDWEKTPLGSIEGWSSDLRQMCNLIMASPHPAAMYWGQELVAIYNEAYVM  616    PAS  PAS_4  PAS_9 
Anam_dcc-1      SSSLSLSSRKNSSPGLHDTTSLDTHPSFVNEQVLCAQTAGNVDWFDSSSSAFCQEGPSFDWTRLPISDS-MPPHIKFARSIEWEKTPLGSIESWSSDLRQMCNLIMASPHPAAMYWGPELVAIYNEAYVM  519    PAS_4  PAS_9 
Apul_dcc-1      PHSSLPESQKISPMTVRDATLIDTHPSFVNEQVLCAQTAGNIDWFDSSSAGFCQEGPSFDWTRLPLSDS-MPPHIRFARSIDWEKTPLGSIEGWSSDLRQMCNLIMASPHPAAMYWGQELVAIYNEAYVM  519    PAS  PAS_4  PAS_9 
Amel_dcc-1      SGSLSLDSHKISPLSVRDTTLLDTHPSFLNEQVLCAQTAGNVDWFDSSSAGFCQEGPSFDWTRLPVSDS-MPPHIKFARSIEWEKTPLGSIEGWSSDLRQMCNLIMASPHPAAMYWGQELVAIYNEAYVM  515    PAS  PAS_4  PAS_9 
                                       *   : ::*       :              *   :*****:*: *. : .* :*** ::* .****.:* *.:*** *.*:**.******:*** *:********:

Ncra_dcc-1      LAGKKHPQLMGAKYKDAWAEIWDEIEPVFDAAWNDGSATMKHDDGLFITRNGFLEETFFNWGIIPLVGGDGTVVALYNPAFENTRRKINERRMLTLREVGVRTSEARDVKGFWSMLLQGLEYNGLDVPFA  692    PAS_9  PAS_4  GAF_2 
Asub_dcc-1      LAGQKHPALMGQRYSDAWSEIWPNVKDVFANALHTGEATMKDDDRLFIMRNDYLEETYFSWSIIPIVGGDGSVMGLYNPAFEKTRRKLAERRMITLREIGERTAAARDVKGFWDQVLTALDLNEQDTPFV  746    PAS_9  PAS_4  GAF_2 
Anam_dcc-1      LAGQKHPALMGQRYADAWSEIWADVKDVFANAMHTGEATMKDDDRLFIMRNDYLEETYFSWSIIPMVGGDGSVMGLYNPAFEKTRRKLAERRMITLREIGERTAPARDVRGFYAEVIAALDLNEHDTPFA  649    PAS_9  PAS_4 
Apul_dcc-1      LAGQKHPALMGQRYSDAWSEIWPDVKDVFANALHTGEATMKDDDRLFIMRNDYLEETYFSWSIIPMVGGDGSVMGLYNPAFEKTRRKLAERRMITLREIGERTAPARDVKGFWGQVLAALDLNEHDTPFV  649    PAS_9  PAS_4 
Amel_dcc-1      LAGQKHPALMGQRYADGWSEIWPEVKDVFANALNTGEATMKDDDRLFIMRGDYLEETYFSWSIIPMVGGDGSVMGLYNPAFEKTRRKLAERRMITLREIGERTAPARDVKGFWSEVLAALDLNEHDTPFV  645    PAS_9  PAS_4 
                 ***:*** * * :* *.*:*** ::: **  * : *.****.** *** *..:****:*.*.***:*** *:*:.*******:****: ****:****:* **: ****:**:  :: .*: *  *.**

Ncra_dcc-1      LVYSVTEDPESEVASINSGSVTNPPQITLEGSVGVPEGHPTAVQSIDLRTSDEGFAPYMRDSMAHPGNPIILSEDDGSLPHELIKGFDWRGFGDPCRTIVVFPVHPTTAGDMVVGFIVLGVNPRRQYDED  822    GAF_2  GAF_3 
Asub_dcc-1      MLYSVQDETDSDASSINSSSALANRQCVLEGTLGVPEDHPAAVSCFDLKTGVDGLGPVFREVMKT-DKPVLLEVGSKDLSVDLLKGLGGRGFDDACRNVVICPVHPTTG-EAVLGFLVVGVNPRRPYDED  874    GAF_2 
Anam_dcc-1      MLYSVQDETDSDASSIHSSSVMTNRQCVLEGTLGVPEDHPAAVSCFDLKTGMEGLGPVFREVMKT-DKPVLLEVGTKDLPAHLLEGLGGRGYDDSCRNVVICPIHPTTG-EAVLGFLVMGVNPRRPYDED  777   
Apul_dcc-1      MLYSVQDETDSDASSIHSSSVMANRQCILEGTLGVPEDHPAATPCFDLKTGMEGLGPVFREVMKT-DKPVLLEVGTKDLPVKLLEGLGGRGFDDSCRNVVICPIHPTTG-EAVLGFLVMGVNPRRPYDED  777   
Amel_dcc-1      MLYSVQDETDSDASSMHSSSAMANRQCILEGTLGVPEDHPVAVSCFDLKGGMEGLGPVFREVMKT-DKPVLLEVGTADLPANLLEGLGGRGFDDSCRNVVICPIHPTTG-EAVLGFLVMGVNPRRPYDED  773   
                 ::*** ::.:*:.:*::*.*.    *  ***::****.**.*. .:**: . :*:.* : : *   .:*::*. .  .*. .*::*:. **:.*.**.:*: *:****. : *:**:*: ***** ***

Ncra_dcc-1      FELFVNLLSRQLATSMASVVLFEEEIKRGQRAARLAALDRQQLSMQLHLRTQEAVESEYRFARMAELGPVGLFIADSHGRINYCNEMWWRISGHERSASTLD-AWMQSIRDEDREGVVNVWHHLVQEKVP  951    GAF_3  PAS_8  PAS_9 
Asub_dcc-1      YGLFIQLLSRQLATSLASVVLFEEEIRRGQRAAKLAAIDRMELSEQLAARTKEAIESETKFTRMAEFAPVGMFIADPEGTITYCNNTWFEISRVSRDENTPDHHWMDAVNDEDRGLINKLWHDLIVHKKP  1004   HisKA  PAS  PAS_4  PAS_9 
Anam_dcc-1      YSLFIQLLNRQLATSLASVVLFEEEIRRGQRAAKLAALDRMELSEQLAARTQEAIESETKFTRMAEFAPVGMFIANSEGTITYCNDTWFEISRVSRDENTPDHHWMDAVNDEDREFINKLWHDLIIEKKP  907    PAS_8  PAS_9 
Apul_dcc-1      YSLFIQLLNRQLATSLASVVLFEEEIRRGQKAAKLAAIDRMELSEQLAARTKEAIESETKFTRMAEFAPVGMFIANSEGTITYCNDTWFEISRVSREENTPDHHWMNAVNDDDRELLNKLWHDLIIEKKP  907    PAS_8  PAS_9 
Amel_dcc-1      YSLFIQLLNRQLATSLASVVLFEEEIRRGQKAAKLAAIDRMELSEQLAARTQEAIESETKFTRMAEFAPVGMFIADSEGTITYCNDTWFEISRVSRDENTPDHHWMDAVNDEDRELINKLWHDLIVEKKP  903    PAS_8  PAS_9 
                *: **::**.******:**********:***:**:***:** :** **   *:**:*** :*:****:.***:***:..* *.***: *:.**  .*. .* *  **::: *:**  : ::**.*: .* 

Ncra_dcc-1      VTYEFRFNGTRKIVDGHTVDTWALMSAYPERDETGELKSIFGCITDISQQKWAEDFQKRRRDEAVELKRQQENFIDITSHEMRNPLSAILQCADEIASGLNRFRQENPAFRGPD----------------  1065   PAS_9  PAS_4  HisKA 
Asub_dcc-1      QTGTFRFKSRWHDTEGMEGDRWVLFSAFPEKYENGNLKSVFGSLTDISKQKWAEGFQKRKMEEAVELKQQHERYLDMTSHEIRNPLSAILQCAEEIVSTLSCLRER---SVDRAVLVAPLQDNPAVGG--  1129   PAS_9  PAS_4  PAS  HisKA 
Anam_dcc-1      QTGTFRFKSKWHGSEGLEGDRWVLFSAYPEKYDDGKLKSVFGSLTDISKQKWAEGFQKRKMEEAVELKRQQENFIDITSHEMRNPLSAILQCADEINTTMSRLKDG---LSGQASL--------------  1020   PAS_9  PAS_4  HisKA 
Apul_dcc-1      QTGTFRFKSKWHGSEGLEGDRWVLFSAYPEKYDDGKLKSVFGSLTDISKQKWAEGFQKRKMEEAVELKRQQENFIDITSHEMRNPLSAILQCADEISTTMSRIRDS---LAGQSELAAPVNKVLSEGHNI  1034   PAS_9  PAS_4  HisKA 
Amel_dcc-1      QTGTFRFKSKWHGSEGLEGDRWVLFSAYPEKYEDGNLKSVFGSLTDISKQKWAEGFQKRKMEEAVELKRQQENFIDITSHEMRNPLSAILQCADEITTTMSRLRDG---LAGQASL--------------  1016   PAS_9  PAS_4  HisKA 
                * *  ***:.  :  :*   * *.*:**:**: : *:*** **.:****:*****.****: :******:*:*.::*:****:***********:** :  . :::      .                 

Ncra_dcc-1      --TLETLVDSCLEAANTISLCASHQKRIVDDILTLSKLDSQLLLVTPVDVQPVQVVEEVLKMFEAELNSNDITGHFQIEQSYRNLEIDWVKLDPSRLKQVLINLMTNAIKFTQGRPTRAITINLGAS---  1190   HisKA  HATPase_c 
Asub_dcc-1      --TLDSVLLSTVDSAQTIALCAQHQRRIIDDVLSLSKLDAQLLLVTPVDGQPLAIAQRAMKMHEGQLQAADIQLQFVIEDSYKDLGIDWVKFDPSRVLQVLINLTTNAIKFTTTEKKRTITVVLAASTKR  1257   HisKA  HATPase_c 
Anam_dcc-1      --TIDGILSSTVDSAQTIALCAQHQKRIVDDILTLSKLDSQLLLVTPVDAQPLTVAQRALKMHEGELQTADIQLKFVVDESYKKLGIDWVKFDPSRVLQVLINLTTNAIKFTTTEKKRTITVTLAASTKR  1148   HisKA  HATPase_c 
Apul_dcc-1      DETLDGVLSSTVDSAQIIALCAQHQKRIVDDILTLSKLDSQLLLVTPVDAQPLTVAQRALKMHEGELQTADIQLKFVVEDSYKNLGVDWVKFDPSRVLQVLINLTTNAIKFTTTEKKRTITVTLAASTKR  1164   PAS_4  HisKA  HATPase_c 
Amel_dcc-1      --TIDGILSSTVDSAQTIALCAQHQKRIVDDILTLSKLDSQLLLVTPVDAQPLTVAQRALKMHEGELQTADIQLKFVVDESYKKLGIDWVKFDPSRVLQVLINLTTNAIKFTTTEKKRTITVTLAAATKR  1144   HisKA  HATPase_c 
                   *:: :: * :::*: *:***.**:**: *:*:*****:********* **: :.:..:**.*.:*:: **  :* :::**:.* :** *:****: ****** *******  . .*:**: *.*:  

Ncra_dcc-1      -KDVSSAGLSYFPPRHPDQEDLTDDAEWATGEKINLHLAVSDTGPGLDENEKKILFQRFSQTSPRTHVQYGGSGLGLFICRILTELQGGQIGVYSEKGEGSTFAFYVKSRKAENPQPVPTVVDNSMSIQP  1319   HATPase_c  GAF_2 
Asub_dcc-1      FSELTDSVVNYIPTRN-KRPDITREKDWGDGEEVYIHFAVQDTGRGLNEEEKTMLFLRFSQASPRTHVQYGGSGLGLFISRELTELQGGEIGVASEAGVGSTFAFYVKAKRSVAP---------------  1371   HATPase_c 
Anam_dcc-1      FSELENRVVNYFPTRN-KHSDLTKEKDWGDGEEVYIHFAVQDTGRGLNEQEKKMLFLRFSQASPRTHVQYGGSGLGLFISRELTELQGGEIGVASEFGVGSTFAFWVKAKRSSAP---------------  1262   HATPase_c 
Apul_dcc-1      FSELENGVVNYFPTRN-KHSDLTKEKDWGDGEEIYIHFAVQDTGRGLNDQEKKMLFLRFSQASPRTHVQYGGSGLGLFISRELTELQGGEIGVASEAGVGSTFAFYVKAKRSSAP---------------  1278   HATPase_c 
Amel_dcc-1      FSELENRVVNYFPTRN-KHADLTKEKDWGDGEDVYIHFAVQDTGRGLNEQEKKMLFLRFSQASPRTHVQYGGSGLGLFISRELTELQGGEIGVASEFGVGSTFAFWVKAKRSSAP---------------  1258   HATPase_c 
                  .:: .  :.*:*.*: .: *:* : :*. **.: :*:**.*** **:::**.:** ****:***************** * *******:*** ** * ******:**::::  *              

Ncra_dcc-1      LQQRVSPQTQGQISHRSSSSAAFSLLGHGRSHAPPTRTQSAPVLADTTQTRSLDVLIVEDNLVNQRVLQRQLQLSGNNTFVANHGGEALVELRKSRFWNKEIAATDDAASALPRSNKKAVNDGGTDGSPD  1449   GAF_2  PAS  Response_reg 
Asub_dcc-1      ------PEAEG--STRSNLRAARDTTGKGESATVNTKAS--------RVSRPIKVLVSHAPYS--------LSSF--------------------------CPFGHCTPSHFPG----------------  1435  
Anam_dcc-1      ------PEAEG--LNRPAVRAASDATGRKIPSMVNAKAGG-------MDARPIRVLIVEDNIVNARVLSKQLKNLGCVVHVANHGGEALDILRKSTYWNHEADTEHATPESERI----------------  1361   Response_reg 
Apul_dcc-1      ------PETEG--LARPAVRAASDATGKKVPTTVNAKAGGA--KDIGKVPKPIKVLVSFLFES--------LITP--------------------------SPN--SSISKYP-----------------  1345  
Amel_dcc-1      ------PEAEG--LNRPAVRTASDATGKKVPTVVNAKAES-------SVARPIKVLIVEDNIVNARVLSKQLKNLGCVVHVANHGGEALDVLRKSNYWNHQADTENVTPESERI----------------  1357   Response_reg 
                       *:: *    *.   :* .  *:  .    :::           .:.: **:              *                                   : .                   

Ncra_dcc-1      GEENSNNNISVILMDLEMPVMDGMSCTREIRRLENVGVITRHIPIIAVTAYARPEQVESARAAGVDDVISKPFRLPELIPKIEELVLKYDREP  1542   Response_reg 
Asub_dcc-1      -------ALSNNS--------------------------------------------------------------------------------  1441  
Anam_dcc-1      -------GLSVVLMDQEMPIMDGLTCTRKIREFEREGKFVRHVPVIAVTANARNEQIETAMNAGMDSVMAKPFRIPELMPKINELMAKYPED-  1446   Response_reg 
Apul_dcc-1      -------SFS-----------------------------------------------------------------------------------  1348  
Amel_dcc-1      -------ELSVVLMDQEMPIMDGLTCTRKIREFEKEGKFVRHVPVIAVTANARNEQIETAMSAGMDDVMPKPFRIPELIPKIEELMSKYPED-  1442   Response_reg 
                         :*                                                                                  

Input files: MFA/Ncra.CLOCK.v02.Aure.dcc-1.aln (alignment), ALN//Ncra.CLOCK.v02.Aure.dcc-1.dom.rgns (regions: exons, domains, low-complexity, etc)

5 sequences, alignment length = 1690
sequence lengths:
  1542  Ncra_dcc-1
  1441  Asub_dcc-1
  1446  Anam_dcc-1
  1348  Apul_dcc-1
  1442  Amel_dcc-1

#domain Ncra_dcc-1Asub_dcc-1Anam_dcc-1Apul_dcc-1Amel_dcc-1
1GAF_21  553..657
2  667..838
3  1265..1366
1  604..720
2  721..890
000
2GAF_31  740..839
2  852..935
0000
3HATPase_c1  1154..1298
1  1218..1365
1  1109..1256
1  1125..1272
1  1105..1252
4HisKA1  1020..1103
1  875..931
2  1073..1167
1  976..1058
1  976..1074
1  972..1054
5PAS1  535..586
2  880..997
3  1372..1418
1  585..672
2  932..1050
3  1056..1093
1  496..573
2  835..953
1  488..576
2  835..953
1  484..571
2  831..949
6PAS_41  542..648
2  887..1001
1  596..703
2  939..1054
1  496..606
2  842..957
1  499..606
2  842..957
3  1010..1047
1  495..602
2  838..953
7PAS_81  291..357
2  880..945
01  835..900
1  835..900
1  831..897
8PAS_91  301..340
2  549..638
3  890..999
1  597..692
2  942..1052
1  500..595
2  845..955
1  500..595
2  845..955
1  496..591
2  841..951
9Response_reg1  1373..1531
01  1301..1436
01  1297..1432

ARC.colors file was not found, using default colors.

Alignment Regions Colorize, ARC v061