cry
Ncra_cry MAP-SKVVIYAMRRELRLSDNPIFHHLSNP--ESKHGFSHLLPVYVFPAQQIDLSGFVPKGS-ENPHPAPKSAVGGYARCGPYRAKFLAESVWDLKTSLQSIGSDLLVRAGPYKDVIQSLVEGLKAK-EC 125 DNA_photolyase
Asub_cry MSPKARVLIYVLRRDLRLADNPIFHEVSRLFQQSQQPFTHFLPVYTFPANQIEVSGFISDSSKKSPYPEARAPVSGFWRCGKLRAKFLAESVWDLKKDLERVGSDLQVRVGTVHDAVRTILESYKEHNEV 130 DNA_photolyase
Anam_cry MSPKARVLIYVLRRDLRLADNPVFHEVSRLSQQSQHPFTHFLPVFTFPANQVEVSGFVSDSAKKSPYPEARAPVSGFWRCGKLRAKFLAESVWDLKKDLERIGSDLQLRVGTVHDAVQSILQGYKENNQV 130 DNA_photolyase
Apul_cry MSPKARVLIYVLRRDLRLADNPVFHEVSRLFQQSQHPFTHFLPVYTFPANQVEVSGFISDSTKKSPYPEARAPVSGFWRCGKLRAKFLAESVWDLKKDLERVGSDLQVRVGTVHDAVRSILDSYKEHNEV 130 DNA_photolyase
Amel_cry MSSKARVLIYVLRRDLRLADNPIFHEVSRLFQQSQHPFTHFLPVYTFPANQVEVSGFIPDSSHKSPYPEARAPVSGFWRCGKLRAKFLAESVWDLKKDLERVGSDLQVRVGTVHDAVRSILQGYKDHEEV 130 DNA_photolyase
*:. ::*:**.:**:***:***:**.:*. :*:: *:*:***:.***:*:::***:. .: :.*:* .::.*.*: *** *************..*: :**** :*.*. :*.::: ::. * : :
Ncra_cry QVGAVWMTSHEGSEEKSEEKTVASFCAKSGIDFKLWDDEKYLIHDRDTGITHLNDLPDVFTTYRKQIEPLREKARKTLPVPEKGALPAYPDIDMIPSQQPPFNIPGTCEELVDAVVRPVKN--FLKDLPD 253 DNA_photolyase
Asub_cry DVAGVWMTNEEGVEEKREEKDVRKLCKQYDSEFKLWVDEKYLVDDRDVPLQDPSQLNDVFTAYRKTVEPLRSAPRKVLPTP--SSLPPLP--SHVPEQSEPFEIPDSLEGVMTALTKPLGDDNGIPNVAK 256 DNA_photolyase
Anam_cry DIAGVWMTNEEGVEEKREEKDVRKLCKEFDAEFKLWQDEKYFVDDRDIPLDDPHKLSDVFTAYRKTVEPLRSAPRKIIPAP--STLPPLP--EHIPAQSEPFEIPDSLKGIMSALTKPLGDDMGIPNMPS 256 DNA_photolyase
Apul_cry DIAGVWMTNEEGVEEKREEKDVRKLCKQFDAEFKLWVDEKYFVDDRDVPFKNPGELNDVFTAYRKTVEPLRSAPRKTLPAP--STLPPLP--SHIPAQAEPFEIPDSLEGVMSALTKPLGDDYGLPDVAK 256 DNA_photolyase
Amel_cry DIAGVWMTNEEGVEEKREEKDVRKLCKEFDSEFKLWVDEKYLVDDRDLPFKDPSQLNDVFTAYRKTVEPLRSAPRKTLPAP--DTLPPLP--THIPAQSEPFKIPNSLEGTISALSKPLGDDLGISNVAK 256 DNA_photolyase
::..****..** *** *** * .:* : . :**** ****::.*** . .* ****:*** :****. .** :*.* .:**. * :* * **:**.: : : *: :*: : : ::.
Ncra_cry FPEKAESSHPFRGGETSAHKRIDHLVLSGGMKSYKDSRNGLLGPDFSTKLSAYLAQGCVTARQIHHALVAYEDGTGTKYKGADGFGEGDNQGTETVRMELLWRDYMRLCHQKYGDKLFRVEGFNGKHTDY 383 FAD_binding_7
Asub_cry WPKGAESAHPYIGGSKSGIERIDHLIESGSMTAYKDTRNGLLGQDFSTKLSAWLALGCFTARQVHWKLIDFEDGKTPLGKDAPGYGKGENKGTAAVRFELLWRDYMRLCTRKFGPRLFHVEGFR---NDQ 383 FAD_binding_7
Anam_cry WPKGAESAHPYVGGSKSGHERIDHLIESGSMSAYKDTRNGLLGQDFSTKLSAWLALGCCTAREIHWKLIDFEDGKTPVGKNAPGYGKGENKGTAAVRFELLWRDYMRLCTRKFGPRLFRVEGFR---NDQ 383 FAD_binding_7
Apul_cry WPKGAESAHPYIGGSKSGHERIDHLIESGSMTAYKDTRNGLLGQDFSTKLSAWLALGCTTARQIHWKLVDFEDGKTDLGKSTPGYGKGENKGTAAVRFELLWRDYMRLCTRKFGPRLFHVEGFR---NDQ 383 FAD_binding_7
Amel_cry WPKGAESAHPYGGGSKSGHERIDHLIESGSMTTYKDTRNGLLGEDFSTKLSAWLALGCFTARQVHWKLVDFEDGKTTLGKGAPGYGKGENKGTAAVRFELLWRDYMRLCTRKFGPRLFQVEGFR---NDQ 383 FAD_binding_7
.:*: ***:**: **..*. :*****: **.*.:***:** *** ********:** ** ***::* *: :***. *.: *:*:*:*:** :**:* ********* :*:* :**:****. .*
Ncra_cry EGEDKKYGWRTANTSIALPGQEPTPEKVSEILARFNAGTTGMGLIDASQRELIHTGYTSNRTRQNVASFLAKHLEIDWRYGAEWYEMLLVDYDVSSNWANWQYVAGVGNDPRGAARIFNPVKQAFDYDKD 513 FAD_binding_7
Asub_cry NASWKYISSPFSDSTDKKNKGGSNDDATAEAVMRFVTGRSGTGLIDASQRELFLTGYTSNRARQNVASYLAKHLGVDWRIGAEWYEMNLIDYDLSSNWGNWQYVAGVGNDPRGEQRVFNPIKQALDYDSQ 513 FAD_binding_7
Anam_cry NASWKYISSPFSDSTDKKNKGGSNDDATAAAVMRFVTGRTGTGLIDASQRELFLTGYTSNRARQNVASYLSKHLGVDWRIGAEWYECNLIDYDLSSNWGNWQYVAGVGNDPRGESRVFNPIKQALDYDSQ 513 FAD_binding_7
Apul_cry NANWKYISSPFSDSTSKKNKGGANDDATAAAVLRFVTGRTGTGLIDASQRELFLTGYTSNRARQNVASYLSKHMGVDWRIGAEWYECNLIDYDLSSNWGNWQYVAGVGNDPRGESRVFNPIKQALDYDSQ 513 FAD_binding_7
Amel_cry NASWKYISSPFSDSTDKKNKGGSNDDATAAAVLRFVTGRTGTGLIDASQRELFLTGYTSNRARQNVASYLSKHLGVDWRIGAEWYECNLIDYDLSNNWGNWQYVAGVGNDPRGESRVFNPVKQALDYDSQ 513 FAD_binding_7
:.. * . :::: .. : .: : ** :* :* **********: *******:******:*:**: :*** ****** * ***:*.**.************** *:***:***:***.
Ncra_cry GTYVRTWVPEV------------AKFENLENVFQAWTASKEDLKTAGLEGNIMVTDPVKPIKFNLDHKPSKVKKRPFFRKRGTKTRDAQGSAESPGSSDSHSGSGGSPDGSGGGNIPSESNCAAAGSGQA 631 FAD_binding_7
Asub_cry GDYIRTWVEELRDVKVESHNEGTQDSQNLMGVFQAWKLPEEEKKRLGIQSVEWVQKPLVKINFSLNR--------------------------------------------------------------- 580 FAD_binding_7
Anam_cry GDYIRTWVEELKDVKVGSQSEGTQDSQNLMGVFQAWKLPEEEKKRLDIQSVEWVQKPLVKIDFSLNR--------------------------------------------------------------- 580 FAD_binding_7
Apul_cry GEYIRTWVEELRDVDVS------QDSSNLMGVFQAWKLPEDEKKKLGIQSVEWVQKPLVKIDFSLNR--------------------------------------------------------------- 574 FAD_binding_7
Amel_cry GEYIRTWVEELRDVKVGTQSEGTQDPQNLMGVFQAWRLPEEEKKRLGIQSVEWVQKPLVKIDFSLNR--------------------------------------------------------------- 580 FAD_binding_7 DNA_photolyase
:* *:**** *: . .** .***** .::: * .::. * .*: *.*.*::
Ncra_cry QQTHQGSGRSQSSSNHGGRSHSHQHNQQNYHHSHRGNDYTRGGGGGRGGRGGRGGGGGGYSASQGYYGIGGGYRGGGRGRGGGGGFRGRYAPTGGLGGHHHSEQQVASQFQTDA 745
Asub_cry ----------------------------------RGGGSKRGRGHGRGGRGG--------------------------GRGGRNEQKAHA------------------------ 610 DNA_photolyase
Anam_cry ----------------------------------RGGGSKRGRGNGRGERGG--------------------------GRGGKSDRRSTPEKAHA------------------- 615
Apul_cry ----------------------------------RGGGSKRGRGNGRGGRGG--------------------------GRGGRGDKRSS------------------------- 603 DNA_photolyase
Amel_cry ----------------------------------RGGGSKRGRGNGRGGRGG--------------------------GRGGRNDRRSTPEKAHA------------------- 615 DNA_photolyase
**.. .** * *** *** **** . :.
Input files: MFA/Ncra.CLOCK.v02.Aure.cry.aln (alignment), ALN//Ncra.CLOCK.v02.Aure.cry.dom.rgns (regions: exons, domains, low-complexity, etc)
5 sequences, alignment length = 780
sequence lengths:
745 Ncra_cry
610 Asub_cry
615 Anam_cry
603 Apul_cry
615 Amel_cry
| # | domain |
Ncra_cry | Asub_cry | Anam_cry | Apul_cry | Amel_cry |
|---|
| 1 | DNA_photolyase | 1 6..208
| 1 7..214
2 535..583
| 1 7..215
| 1 7..214
2 529..577
| 1 7..214
2 537..583
|
| 2 | FAD_binding_7 | 1 265..565
| 1 268..580
| 1 268..579
| 1 268..574
| 1 268..579
|
| |
ARC.colors file was not found, using default colors.
Alignment Regions Colorize, ARC v061