cao-2

Ncra_cao-2      MSPHEVIGTVPKNSTTFRTQADEHDDHEEALQNLRTGKYEDWPNEAAFDGLTEERGPIKIAVTGNIPTWAAGSLYRTGPGLYKIDT-DAGTTFEMSHWFDGLAHTHRFDIIP--NEEGSVDIFYSSRRQA  127    RPE65 
Asub_cao-2      -----MVTSITK-----------------------TDHYMNWPNACGFDVTYQELEPKELEVSGHIPAYCAGVLYRNGLGPLEVQTRQQHKTFKTNHWFDCLAQIHRFQILAPTKNDSPVRVWHNSRRTC  102    RPE65 
                      :: ::.*                       *.:* :*** ..**   :*  * :  *:*:**::.** ***.* *  :::* :  .**: .**** **: ***:*:.  :::..  :::.*** 

Ncra_cao-2      EEMMDVIKKQGTWPYYSFGQKADPCLGFFAKAMAAFKGLREPSGEKWHNNVNVAVHVNPPGLEAVRNIVGTRKPAVAENDANVLGHRPELPKSIWVSTDNSTMKQIDPQTLEPIGWATQDVLHPELTGAM  257    RPE65 
Asub_cao-2      DGLLKQISETGDMSGITFAAKYEPCKTFFKKLQSVFYSMHTP--IETPDSVNICVTPSP-------NMPGFSTNAFKKTGAQDSGNVQTLIN----KTDATVVQALDPVTLEPLGIARQTVLHPDLKGAL  219    RPE65 
                .: ::. *.: *  .  :*. * :**  ** *  :.* .:: *   :  : **:.*  .*       *: *  . *. :..*:  *:   * :    .** :.:: :**  ***:* * * ****:*.**

Ncra_cao-2      SCAHAQRDPDTGDFFNFNLEFGPKPTYRVFRVDASSGKTEILATIREPSVSPAYIHSLFLSPSFVILCIPTSHFGLSGTQIPWERNLVDAIKPYDPSRKTQWIVIDRKHS----KGVVARFETDGRFFFH  383    RPE65 
Asub_cao-2      SGAHAKVCPKTGDWYNFNLDFERTGTYRVFTVSATTEKTEILATIAT---TPAYLHSSLLTDNYFVLCVWNSHISAGGVSILWKQNICEALSTFDSTKTAKWYVIDRKPASQGGKGLVSTFDSDPFFCFH  346    RPE65 
                :* ***:  *.***::****:*  . ***** *.*:: ** *****     :***:** :*: .:.:**: .**:. .*..* *::*: :*:..:*.::. :* ***** :    **:*: *::*  * *

Ncra_cao-2      TVNSFEEKAGSDSSDINLYCDVIDFGSHEFIHSLYLDVILNRDSAAKKFYEDEQRARNSLAHLTRYHFIINPDSPTTNLPVTPTPDPKNHEAFRIPAPHAGEIPTINPLYATRKHRYVYSLPFRGRGTIT  513    RPE65 
Asub_cao-2      TINAYEVTSEDDPKSIDIVADLCAYDNIDVLQRFYIDNLRS-DSATAKAYSHPDNA-NSKAYFR------SFKLPGINTAFSPTEAKKAINVARGDKGLAPELPSINHAFRGRNYRYVYGVTDTGKSTFF  468    RPE65 
                **:*::* .: .*...*:: .*:  :.. : :: :*:* : . ***: * *.. :.* ** *::       . . *  * ..:**   *  :. *     * *:*:**  :  *::****.:.  *:.*:

Ncra_cao-2      DAIVKTDTVTREALFWDNPKGHTPGEAIFIPRPGG--EEEDDGVLLSLVLDGEKGKSYLLCLDAKTMAEMGRAEVD-----FAIALGFHGAHVPSGRTLTRVEGPEY  613    RPE65 
Asub_cao-2      DGLVKYDTRTNTPAAVWSVHGHSAGEPIFIADPDAKAEEEDAGVVITAVLDGVNERSYLLVLDAKDLKEVGRATMTGERGKCHIGFGFHGAHVRDQK--AVIEGC--  571    RPE65 
                 *.:** ** *. .    .  **:.**.***. *..  **** **::: **** : :**** **** : *:*** :        *.:******* . :  : :**  

Input files: MFA/Ncra.CLOCK.v02.Aure.cao-2.aln (alignment), ALN//Ncra.CLOCK.v02.Aure.cao-2.dom.rgns (regions: exons, domains, low-complexity, etc)

2 sequences, alignment length = 650
sequence lengths:
  613  Ncra_cao-2
  571  Asub_cao-2

#domain Ncra_cao-2Asub_cao-2
1RPE651  44..600
1  16..562

ARC.colors file was not found, using default colors.

Alignment Regions Colorize, ARC v061