cao-2
Ncra_cao-2 MSPHEVIGTVPKNSTTFRTQADEHDDHEEALQNLRTGKYEDWPNEAAFDGLTEERGPIKIAVTGNIPTWAAGSLYRTGPGLYKIDT-DAGTTFEMSHWFDGLAHTHRFDIIP--NEEGSVDIFYSSRRQA 127 RPE65
Asub_cao-2 -----MVTSITK-----------------------TDHYMNWPNACGFDVTYQELEPKELEVSGHIPAYCAGVLYRNGLGPLEVQTRQQHKTFKTNHWFDCLAQIHRFQILAPTKNDSPVRVWHNSRRTC 102 RPE65
:: ::.* *.:* :*** ..** :* * : *:*:**::.** ***.* * :::* : .**: .**** **: ***:*:. :::.. :::.***
Ncra_cao-2 EEMMDVIKKQGTWPYYSFGQKADPCLGFFAKAMAAFKGLREPSGEKWHNNVNVAVHVNPPGLEAVRNIVGTRKPAVAENDANVLGHRPELPKSIWVSTDNSTMKQIDPQTLEPIGWATQDVLHPELTGAM 257 RPE65
Asub_cao-2 DGLLKQISETGDMSGITFAAKYEPCKTFFKKLQSVFYSMHTP--IETPDSVNICVTPSP-------NMPGFSTNAFKKTGAQDSGNVQTLIN----KTDATVVQALDPVTLEPLGIARQTVLHPDLKGAL 219 RPE65
.: ::. *.: * . :*. * :** ** * :.* .:: * : : **:.* .* *: * . *. :..*: *: * : .** :.:: :** ***:* * * ****:*.**
Ncra_cao-2 SCAHAQRDPDTGDFFNFNLEFGPKPTYRVFRVDASSGKTEILATIREPSVSPAYIHSLFLSPSFVILCIPTSHFGLSGTQIPWERNLVDAIKPYDPSRKTQWIVIDRKHS----KGVVARFETDGRFFFH 383 RPE65
Asub_cao-2 SGAHAKVCPKTGDWYNFNLDFERTGTYRVFTVSATTEKTEILATIAT---TPAYLHSSLLTDNYFVLCVWNSHISAGGVSILWKQNICEALSTFDSTKTAKWYVIDRKPASQGGKGLVSTFDSDPFFCFH 346 RPE65
:* ***: *.***::****:* . ***** *.*:: ** ***** :***:** :*: .:.:**: .**:. .*..* *::*: :*:..:*.::. :* ***** : **:*: *::* * *
Ncra_cao-2 TVNSFEEKAGSDSSDINLYCDVIDFGSHEFIHSLYLDVILNRDSAAKKFYEDEQRARNSLAHLTRYHFIINPDSPTTNLPVTPTPDPKNHEAFRIPAPHAGEIPTINPLYATRKHRYVYSLPFRGRGTIT 513 RPE65
Asub_cao-2 TINAYEVTSEDDPKSIDIVADLCAYDNIDVLQRFYIDNLRS-DSATAKAYSHPDNA-NSKAYFR------SFKLPGINTAFSPTEAKKAINVARGDKGLAPELPSINHAFRGRNYRYVYGVTDTGKSTFF 468 RPE65
**:*::* .: .*...*:: .*: :.. : :: :*:* : . ***: * *.. :.* ** *:: . . * * ..:** * :. * * *:*:** : *::****.:. *:.*:
Ncra_cao-2 DAIVKTDTVTREALFWDNPKGHTPGEAIFIPRPGG--EEEDDGVLLSLVLDGEKGKSYLLCLDAKTMAEMGRAEVD-----FAIALGFHGAHVPSGRTLTRVEGPEY 613 RPE65
Asub_cao-2 DGLVKYDTRTNTPAAVWSVHGHSAGEPIFIADPDAKAEEEDAGVVITAVLDGVNERSYLLVLDAKDLKEVGRATMTGERGKCHIGFGFHGAHVRDQK--AVIEGC-- 571 RPE65
*.:** ** *. . . **:.**.***. *.. **** **::: **** : :**** **** : *:*** : *.:******* . : : :**
Input files: MFA/Ncra.CLOCK.v02.Aure.cao-2.aln (alignment), ALN//Ncra.CLOCK.v02.Aure.cao-2.dom.rgns (regions: exons, domains, low-complexity, etc)
2 sequences, alignment length = 650
sequence lengths:
613 Ncra_cao-2
571 Asub_cao-2
# | domain |
Ncra_cao-2 | Asub_cao-2 |
1 | RPE65 | 1 44..600
| 1 16..562
|
|
ARC.colors file was not found, using default colors.
Alignment Regions Colorize, ARC v061