cao-1

Ncra_cao-1      MAEYVFSDAPKDSHGNGVKDAVPGKQPEELPPAPRYFQGENTAGFMRPVRFEGDITNLEVVGEIPKSIEG-TFYRVMPEPHLPSFIPNDP-WFNGDGNISGFYFKDG-----HVDLKQRYVRTEKFVREA  123    RPE65 
Asub_cao-1      --------------MSGHFRSIPVQVSQEFPQLPQFS------GFMKPCRFEGEIHNLEVHGSIPADIDG-TFYRVMPDPHFPPTVENDP-WFNGDGNVSAFNIKAG-----RVHFKQRYVRTEKFLREK  103    RPE65 
Anam_cao-1      -------------------MPLFAHNKKDPPQHKHAYLS----GNFAPIDQTLPLTPCTYEGTIPSELAGGEYVRNGGNPVKNEDLGRDAHWFDGDGMLSGVSFTRQSDGSVQPEFVNQYILTDIFLSTA  107    RPE65 
Apul_cao-1      -------------------MPFFAK-KKSPPQHKHAYLS----GNFAPINQTLPLTKCTYEGDIPCELAGGEYVRNGGNPVSNEDLGRDAHWFDGDGMLSGVSFTRQPDGSVQPEFVNQYILTDIFLSTV  106    RPE65 
Amel_cao-1      -------------------MPLFAQ-KKGPPQHKHAYLS----GNFAPINQTLPLTKCTYDGNIPSELAGGEYVRNGGNPVSNEDLGRDAHWFDGDGMLSGVSFTRQPDGSIQPEFVNQYILTDIFLSTL  106    RPE65 
                                     ..  :  :  *   :        * : *      :      * ** .: *  : *   :*     : .*. **:*** :*.. :.       : .: :: : *: *:  

Ncra_cao-1      EARRS------LLGKYRNRYTDLVEFKIR-----------------------STANTNIVYWRGQLLALKEDSPPYAMDPETLETFGVYD----------FDGQLPSLT-----------FTAHPKFDPV  203    RPE65 
Asub_cao-1      EAQRA------LLGKYRNKYTDAVEFKVR-----------------------STANTNVFYFNGKLLACKEDSPPYAMNPETLETVGLWD----------FDGQLPSVT-----------FSAHPKIDPI  183    RPE65 
Anam_cao-1      ASPRLRSPILPSIATLVNPLSSLVAIVLRILRTVVLVILSFLPGSTRAIKRISVANTSILYHDGRALATCESGPPMRIALPGLETIGWYDGNRAEGEPESHNKNDLSFSGNGLLGFLREWTTAHPKVDPI  237    RPE65 
Apul_cao-1      ASSRLRSPILPSIATLVNPLASLFTIVLRILRTIVLVVLSFLPGSTRAIKRISVANTAILYHDGRALATCESGPPMRIALPGLETVGWYDGNRAEGEPEAHDKNDPSFSGSGLLGFMREWTTAHPKVDPT  236    RPE65 
Amel_cao-1      ASPRLRSPILPSIATLVNPLSSLITIILRILRTIALVILSFLPGSTRAIKKISVANTSILYHDGRALATCESGPPMRIALPGLETVGWYDGNRAEGEPEPLNKNDPSFSEQGLLGFLREWTTAHPKVDPI  236    RPE65 
                  : *        :..  *  :. . : :*                       *.*** :.*  *: **  *..**  :    ***.* :*           : :  *.:            :****.**

Ncra_cao-1      TREMVCFGYEAKGDGTR-DICYYSFGPDGKIAETVWLVSPVCG---MIHDFAVTENFVIFPIIPLVCDVERMKQGGDHWQWDYSIPMYIGVLPRRGAQGSDVKWFEAPHGFAGHVANAFEDDKG----HI  325    RPE65 
Asub_cao-1      TKELISFGYEAKGDGTP-DICYYTVSPDGIFTEVVWMTAPVLA---MIHDFAVTQNYVIFPLIPQTCDVNRMKQGGEHWRWDPEIPFYIGVLPRRGAKGSDIKWFRAPNAFPGHTSNAYETPDG----DI  305    RPE65 
Anam_cao-1      TKEMMLFHSTFLPPYVQYSIISPTSARSETNKGIVQRPVPGITGAKMMHDFGVSLKHTIIMDLPLSLDPFNLAKNKPVIEYDATKPARFGVFPRHHPE--QVKYFETTACCIFHTANAWDDFDASGQVET  365    RPE65 
Apul_cao-1      TKEMMLFHSTFFPPYVQYSIIPQASSRSDSNKGMVQRPVPGITGAKMMHDFGVSLKHTIIMDLPLSLDPLNLARNKPVIDYDATKPARFGVFPRHNPE--QVKYFETTACCIFHTANAWDDFDASGQVET  364    RPE65 
Amel_cao-1      TKEMMLFHSTFLPPYVQYSIIPPTSARSETNKGIVQRPVPGIAGAKMMHDFGVSLKHTIIMDLPLSLDPFNLAKNKPVIDYDATKPARFGVFPRHHPE--RVKYFETTACCIFHTANAWDDFDPSGEVET  364    RPE65 
                 *:*:: *        .  .*   : . .      *           *:***.*: :..*:  :*   *  .: :.     :*   *  :**:**: .:   :*:*.:.     *.:**::  .     .

Ncra_cao-1      QLQMAYAKDNVFFWWPDANGKGPRPGEVEAHFAN----FVLDYQSDKLPLAE-------------PTYLVDDD-------------------------------------------------MEFPRIDD  389    RPE65 
Asub_cao-1      LFELPISDKNVFFWWPDAQGNAPDPHQITSNLAQ----FIINPNSEDMKLS--------------PTYVLKED-------------------------------------------------VEFPRVDD  368    RPE65 
Anam_cao-1      VHLLTCRLTSACLVFSAGNIAAPRPTNDTVKAVKKSMPFFSKYNADEQCLYEGAPGLESPSLEREPLIQITGNHQDDASYFGKQEDDDEETIE-DDQCRLYHYAFSLKSSQITAQYALSGISFEFPSVHP  494    RPE65 
Apul_cao-1      VHLLTCRLTSACLVFSAGNIAAPQPTKSTVKAVKKKMPFFSKYDADEQCLFEGAPDLESPRLEREPLIKMTADGHATAAYS----DEAEEIPEEDDQCRLYHYAFSLKSSQITAQYALSAISFEFPSVHP  490    RPE65 
Amel_cao-1      VHLLTCRLTSACLVFSAGNIAAPRPTKQTAKAVKKTMPFFSKYNADEKCLFEGAPTLESPGLEHEPLIKMNKNGQDTPSYFDERDDDIEDIPEEDDQCRLYHYAFSLKSSQITAQYGLSAISFEFPSVHP  494    RPE65 
                    :.    .. : :. .:  .* * :   : .:    *. . :::.  *               *   :  :                                                 .*** :.

Ncra_cao-1      RVATRKHKHTFFC---------------------------IFDRKPGVTDFEFVMPRAGGGAPMSNGLAHLNHETGDIQRYLPGPR-KLTGECIFIPRNSEAAE----GDGYVMVLLANYEDMCS-----  482    RPE65 
Asub_cao-1      RVSMSKHRDVFCL---------------------------LMDPALG-TDFPSIAPVMGGGYPPYNSVAHYNSLTGECVKYFAGKT-HLMQEPVFIPR-AGGSE----GDGWILLLVNNYGQMAS-----  459    RPE65 
Anam_cao-1      EFDMQKARYVYGCTTSISSFNAALGRSVKIDALAKIDTKALIETGDRLTELGKLEPVTGCVDTRTVQEIADHPLQNDPIQIFRMPAGWYAQEPRFVPRKASPGQTSAEDDGFLLAYAFDESQLGPDGEVP  624    RPE65 
Apul_cao-1      DLDMQEARYVYGCSTTVSSFNAALGRSVKIDALAKVDTKTLIQKGDRLMNLGKLEPVTGCVDTRTVQEVIDSPLENDPIQVFRMPAGWFAQEPRFVPRKAVAGQTLAEDDGYLLTYAFDESQLRTDGEVP  620    RPE65 
Amel_cao-1      DLDMQKARFVYGCTTSISSFNAALGRSVKIDALAKIDARTLIEKGDRLTDQGKLEKITGCVDTRTVQEIVNNPLENDPIQIFQMPTGWFAQEPRFVPRKAAPGQTLAEDDGYLLTYAFDESQLGPDGEVP  624    RPE65 
                  .   : : .:                             :::      :   :    *   .            .:    :         *  *:** :  .:    .**:::    :  :: .    

Ncra_cao-1      -----------ELAVLDTKDLTNEVALIKLPVRLRPGLHGNWVDKSDVDGHPAPL-----------------------------  526    RPE65 
Asub_cao-1      -----------ELHLVDTRDFSKAQAIISLPVRLRAGLHGNWVDGQDLQLIEN-------------------------------  501    RPE65 
Anam_cao-1      SDEDATVRAKSELWIIDAKDMNTVVGRVALPQRVPYGLHGTWFPEENILGQKAVETVRSISEAKLKKDGSTWMKIRASIEGMLS  708    RPE65 
Apul_cao-1      SDTDAASRAKSELWIIDAKDMSTVVGRVALPQRVPYGLHGSWFPEDDILGQKAIDAVRSISDAKSDHNGGIWMNIRASIESMLS  704    RPE65 
Amel_cao-1      SDTDATKRAKSELWIIDAKDMSTVIGRIALPQRVPYGLHGSWFPEEDILGQKAIDTVRSISETKTKKYESTWMNIRASVESMLS  708    RPE65 
                            ** ::*::*:..  . : ** *:  ****.*.  .::                                   

Input files: MFA/Ncra.CLOCK.v02.Aure.cao-1.aln (alignment), ALN//Ncra.CLOCK.v02.Aure.cao-1.dom.rgns (regions: exons, domains, low-complexity, etc)

5 sequences, alignment length = 780
sequence lengths:
  526  Ncra_cao-1
  501  Asub_cao-1
  708  Anam_cao-1
  704  Apul_cao-1
  708  Amel_cao-1

#domain Ncra_cao-1Asub_cao-1Anam_cao-1Apul_cao-1Amel_cao-1
1RPE651  42..515
1  22..492
1  19..668
1  18..664
1  18..668

ARC.colors file was not found, using default colors.

Alignment Regions Colorize, ARC v061