cao-1
Ncra_cao-1 MAEYVFSDAPKDSHGNGVKDAVPGKQPEELPPAPRYFQGENTAGFMRPVRFEGDITNLEVVGEIPKSIEG-TFYRVMPEPHLPSFIPNDP-WFNGDGNISGFYFKDG-----HVDLKQRYVRTEKFVREA 123 RPE65
Asub_cao-1 --------------MSGHFRSIPVQVSQEFPQLPQFS------GFMKPCRFEGEIHNLEVHGSIPADIDG-TFYRVMPDPHFPPTVENDP-WFNGDGNVSAFNIKAG-----RVHFKQRYVRTEKFLREK 103 RPE65
Anam_cao-1 -------------------MPLFAHNKKDPPQHKHAYLS----GNFAPIDQTLPLTPCTYEGTIPSELAGGEYVRNGGNPVKNEDLGRDAHWFDGDGMLSGVSFTRQSDGSVQPEFVNQYILTDIFLSTA 107 RPE65
Apul_cao-1 -------------------MPFFAK-KKSPPQHKHAYLS----GNFAPINQTLPLTKCTYEGDIPCELAGGEYVRNGGNPVSNEDLGRDAHWFDGDGMLSGVSFTRQPDGSVQPEFVNQYILTDIFLSTV 106 RPE65
Amel_cao-1 -------------------MPLFAQ-KKGPPQHKHAYLS----GNFAPINQTLPLTKCTYDGNIPSELAGGEYVRNGGNPVSNEDLGRDAHWFDGDGMLSGVSFTRQPDGSIQPEFVNQYILTDIFLSTL 106 RPE65
.. : : * : * : * : * ** .: * : * :* : .*. **:*** :*.. :. : .: :: : *: *:
Ncra_cao-1 EARRS------LLGKYRNRYTDLVEFKIR-----------------------STANTNIVYWRGQLLALKEDSPPYAMDPETLETFGVYD----------FDGQLPSLT-----------FTAHPKFDPV 203 RPE65
Asub_cao-1 EAQRA------LLGKYRNKYTDAVEFKVR-----------------------STANTNVFYFNGKLLACKEDSPPYAMNPETLETVGLWD----------FDGQLPSVT-----------FSAHPKIDPI 183 RPE65
Anam_cao-1 ASPRLRSPILPSIATLVNPLSSLVAIVLRILRTVVLVILSFLPGSTRAIKRISVANTSILYHDGRALATCESGPPMRIALPGLETIGWYDGNRAEGEPESHNKNDLSFSGNGLLGFLREWTTAHPKVDPI 237 RPE65
Apul_cao-1 ASSRLRSPILPSIATLVNPLASLFTIVLRILRTIVLVVLSFLPGSTRAIKRISVANTAILYHDGRALATCESGPPMRIALPGLETVGWYDGNRAEGEPEAHDKNDPSFSGSGLLGFMREWTTAHPKVDPT 236 RPE65
Amel_cao-1 ASPRLRSPILPSIATLVNPLSSLITIILRILRTIALVILSFLPGSTRAIKKISVANTSILYHDGRALATCESGPPMRIALPGLETVGWYDGNRAEGEPEPLNKNDPSFSEQGLLGFLREWTTAHPKVDPI 236 RPE65
: * :.. * :. . : :* *.*** :.* *: ** *..** : ***.* :* : : *.: :****.**
Ncra_cao-1 TREMVCFGYEAKGDGTR-DICYYSFGPDGKIAETVWLVSPVCG---MIHDFAVTENFVIFPIIPLVCDVERMKQGGDHWQWDYSIPMYIGVLPRRGAQGSDVKWFEAPHGFAGHVANAFEDDKG----HI 325 RPE65
Asub_cao-1 TKELISFGYEAKGDGTP-DICYYTVSPDGIFTEVVWMTAPVLA---MIHDFAVTQNYVIFPLIPQTCDVNRMKQGGEHWRWDPEIPFYIGVLPRRGAKGSDIKWFRAPNAFPGHTSNAYETPDG----DI 305 RPE65
Anam_cao-1 TKEMMLFHSTFLPPYVQYSIISPTSARSETNKGIVQRPVPGITGAKMMHDFGVSLKHTIIMDLPLSLDPFNLAKNKPVIEYDATKPARFGVFPRHHPE--QVKYFETTACCIFHTANAWDDFDASGQVET 365 RPE65
Apul_cao-1 TKEMMLFHSTFFPPYVQYSIIPQASSRSDSNKGMVQRPVPGITGAKMMHDFGVSLKHTIIMDLPLSLDPLNLARNKPVIDYDATKPARFGVFPRHNPE--QVKYFETTACCIFHTANAWDDFDASGQVET 364 RPE65
Amel_cao-1 TKEMMLFHSTFLPPYVQYSIIPPTSARSETNKGIVQRPVPGIAGAKMMHDFGVSLKHTIIMDLPLSLDPFNLAKNKPVIDYDATKPARFGVFPRHHPE--RVKYFETTACCIFHTANAWDDFDPSGEVET 364 RPE65
*:*:: * . .* : . . * *:***.*: :..*: :* * .: :. :* * :**:**: .: :*:*.:. *.:**:: . .
Ncra_cao-1 QLQMAYAKDNVFFWWPDANGKGPRPGEVEAHFAN----FVLDYQSDKLPLAE-------------PTYLVDDD-------------------------------------------------MEFPRIDD 389 RPE65
Asub_cao-1 LFELPISDKNVFFWWPDAQGNAPDPHQITSNLAQ----FIINPNSEDMKLS--------------PTYVLKED-------------------------------------------------VEFPRVDD 368 RPE65
Anam_cao-1 VHLLTCRLTSACLVFSAGNIAAPRPTNDTVKAVKKSMPFFSKYNADEQCLYEGAPGLESPSLEREPLIQITGNHQDDASYFGKQEDDDEETIE-DDQCRLYHYAFSLKSSQITAQYALSGISFEFPSVHP 494 RPE65
Apul_cao-1 VHLLTCRLTSACLVFSAGNIAAPQPTKSTVKAVKKKMPFFSKYDADEQCLFEGAPDLESPRLEREPLIKMTADGHATAAYS----DEAEEIPEEDDQCRLYHYAFSLKSSQITAQYALSAISFEFPSVHP 490 RPE65
Amel_cao-1 VHLLTCRLTSACLVFSAGNIAAPRPTKQTAKAVKKTMPFFSKYNADEKCLFEGAPTLESPGLEHEPLIKMNKNGQDTPSYFDERDDDIEDIPEEDDQCRLYHYAFSLKSSQITAQYGLSAISFEFPSVHP 494 RPE65
:. .. : :. .: .* * : : .: *. . :::. * * : : .*** :.
Ncra_cao-1 RVATRKHKHTFFC---------------------------IFDRKPGVTDFEFVMPRAGGGAPMSNGLAHLNHETGDIQRYLPGPR-KLTGECIFIPRNSEAAE----GDGYVMVLLANYEDMCS----- 482 RPE65
Asub_cao-1 RVSMSKHRDVFCL---------------------------LMDPALG-TDFPSIAPVMGGGYPPYNSVAHYNSLTGECVKYFAGKT-HLMQEPVFIPR-AGGSE----GDGWILLLVNNYGQMAS----- 459 RPE65
Anam_cao-1 EFDMQKARYVYGCTTSISSFNAALGRSVKIDALAKIDTKALIETGDRLTELGKLEPVTGCVDTRTVQEIADHPLQNDPIQIFRMPAGWYAQEPRFVPRKASPGQTSAEDDGFLLAYAFDESQLGPDGEVP 624 RPE65
Apul_cao-1 DLDMQEARYVYGCSTTVSSFNAALGRSVKIDALAKVDTKTLIQKGDRLMNLGKLEPVTGCVDTRTVQEVIDSPLENDPIQVFRMPAGWFAQEPRFVPRKAVAGQTLAEDDGYLLTYAFDESQLRTDGEVP 620 RPE65
Amel_cao-1 DLDMQKARFVYGCTTSISSFNAALGRSVKIDALAKIDARTLIEKGDRLTDQGKLEKITGCVDTRTVQEIVNNPLENDPIQIFQMPTGWFAQEPRFVPRKAAPGQTLAEDDGYLLTYAFDESQLGPDGEVP 624 RPE65
. : : .: ::: : : * . .: : * *:** : .: .**::: : :: .
Ncra_cao-1 -----------ELAVLDTKDLTNEVALIKLPVRLRPGLHGNWVDKSDVDGHPAPL----------------------------- 526 RPE65
Asub_cao-1 -----------ELHLVDTRDFSKAQAIISLPVRLRAGLHGNWVDGQDLQLIEN------------------------------- 501 RPE65
Anam_cao-1 SDEDATVRAKSELWIIDAKDMNTVVGRVALPQRVPYGLHGTWFPEENILGQKAVETVRSISEAKLKKDGSTWMKIRASIEGMLS 708 RPE65
Apul_cao-1 SDTDAASRAKSELWIIDAKDMSTVVGRVALPQRVPYGLHGSWFPEDDILGQKAIDAVRSISDAKSDHNGGIWMNIRASIESMLS 704 RPE65
Amel_cao-1 SDTDATKRAKSELWIIDAKDMSTVIGRIALPQRVPYGLHGSWFPEEDILGQKAIDTVRSISETKTKKYESTWMNIRASVESMLS 708 RPE65
** ::*::*:.. . : ** *: ****.*. .::
Input files: MFA/Ncra.CLOCK.v02.Aure.cao-1.aln (alignment), ALN//Ncra.CLOCK.v02.Aure.cao-1.dom.rgns (regions: exons, domains, low-complexity, etc)
5 sequences, alignment length = 780
sequence lengths:
526 Ncra_cao-1
501 Asub_cao-1
708 Anam_cao-1
704 Apul_cao-1
708 Amel_cao-1
# | domain |
Ncra_cao-1 | Asub_cao-1 | Anam_cao-1 | Apul_cao-1 | Amel_cao-1 |
1 | RPE65 | 1 42..515
| 1 22..492
| 1 19..668
| 1 18..664
| 1 18..668
|
|
ARC.colors file was not found, using default colors.
Alignment Regions Colorize, ARC v061