arp-3

Ncra_arp-3      MANTTPAVVMDNGTGFSKLGFAGNDSPSFVFPTAIATKSPSAGTGGSGSGRPAVANKPSFLTGGAGPGGHLSAKRGTEDLDYFIGDEAVAAANGPGYGLHYPIRHGQIENWDHMERFWSNSIFKYLRVEP  130    Actin 
Asub_arp-3      MANQTPAVVMDNGTGYTKLGFAGNDSPSFVFPTAIATKGPTSGSAGR-SGRPGGGNNASMLSG----------KRGTEDLDYFIGDEALAASSGPGYGLHYPIRHGQVENWDQMERFWSNSIFKYLRVEP  119    Actin 
Anam_arp-3      MANQTPAVVMDNGTGYTKLGFAGNDSPSFVFPTAIATKGPTDSSAGR-SGRPGGGNNASMLSG----------KRGTEDLDYFIGDEALAASSGPGYGLHYPIRHGQIENWDQMERFWSNSIFKYLRVEP  119    Actin 
Apul_arp-3      MANQTPAVVMDNGTGYTKLGFAGNDSPSFVFPTAIATKGPTSGTVGR-SGRPGGGNNASMLSG----------KRGTEDLDYFIGDEALAASSGPGYGLHYPIRHGQVENWDQMERFWSNSIFKYLRVEP  119    Actin 
Amel_arp-3      MANQTPAVVMDNGTGYTKLGFAGNDSPSFVFPTAIATKGPTDSSAGR-SGRPGG-NNSSMLSG----------KRGTEDLDYFIGDEALAASSGPGYGLHYPIRHGQIENWDQMERFWSNSIFKYLRVEP  118    Actin 
                 *** ***********::*********************.*: .: *  ****.  *:.* *:*          ***************:**:.**************:****:****** *********

Ncra_arp-3      EDHHFLLTEPPLNPPENRENTAEIFFESFNCAGLYIAVQAVLALAASWTSSKVQDRSLTGTVIDSGDGVTHVIPVAEGYVIGSSIKSIPIAGRDITYFVQSLLRDRGEPDSSLKTAQEIKEEYCYVCPDI  260    Actin 
Asub_arp-3      EDHHFLLTEPPLNPPENREATAEIMFESFNVAGLYIAVQAVLALAASWTSSKVQDRSLTGTVIDSGEGVTHVIPVAEGYVIGSSIKSVPIAGRDITYFVQSLLRDRGEPDSSLKTAEKIKEEFCYVCPDI  249    Actin 
Anam_arp-3      EDHHFLLTEPPLNPPENREATAEIMFESFNVAGLYIAVQAVLALAASWTSSKVQDRSLTGTVIDSGEGVTHVIPVAEGYVIGSSIKSVPIAGRDITYFVQSLLRDRGEPDSSLKTAEKIKEEFCYVCPDI  249    Actin 
Apul_arp-3      EDHHFLLTEPPLNPPENREATAEIMFESFNVAGLYIAVQAVLALAASWTSSKVQDRSLTGTVIDSGEGVTHVIPVAEGYVIGSSIKSVPIAGRDITYFVQSLLRDRGEPDSSLKTAEKIKEEFCYVCPDI  249    Actin 
Amel_arp-3      EDHHFLLTEPPLNPPENREATAEIMFESFNVAGLYIAVQAVLALAASWTSSKVQDRSLTGTVIDSGEGVTHVIPVAEGYVIGSSIKSVPIAGRDITYFVQSLLRDRGEPDSSLKTAEKIKEEFCYVCPDI  248    Actin 
                ******************** ****:***** ****************** ****************:********************:********************* ******::****:******

Ncra_arp-3      VKEFAKYDRDRSRFLKHTITQPGGRQVTVDVGYERFMAPEIFFNPEIYSSDFLTPLPVVVDGVIQSSPIDVRRGLYKNIVLSGGSTLYKDFGRRLQRDIKQLVDTRIKASEVRSGGAKSGGLDVQVITHK  390    Actin 
Asub_arp-3      VKEFARYDREPERFGKHTINYPNGRNAVVDVGYERFLAPEIFFNPEIYSSDFLTPLPNIVDTVIQQSPIDVRRGLYKNIVLSGGSTLYENFGRRLQRDIRHLVDARIQASEARSGGAKSGGLDVQVITHK  379    Actin 
Anam_arp-3      VKEFARYDREPERFGKHTINYPNGRNAVVDVGYERFLAPEIFFNPEIYSSDFLTPLPNIVDTVIQQSPIDVRRGLYKNIVLSGGSTLYENFGRRLQRDIRHLVDARIQASEARSGGAKSGGLDVQVITHK  379    Actin 
Apul_arp-3      VKEFARYDREPERFGKHTINYPNGRNAVVDVGYERFLAPEIFFNPEIYSSDFLTPLPNIVDTVIQQSPIDVRRGLYKNIVLSGGSTLYENFGRRLQRDIRHLVDARIQASEARSGGAKSGGLDVQVITHK  379    Actin 
Amel_arp-3      VKEFARYDREPERFGKHTINYPNGRSAVVDVGYERFLAPEIFFNPEIYSSDFLTPLPNIVDTVIQQSPIDVRRGLYKNIVLSGGSTLYENFGRRLQRDIRHLVDARIQASEARSGGAKSGGLDVQVITHK  378    Actin 
                ******:***: .** ****. *.**...********:** ***************** :** ***.**********************::********* :***:**:***.*****************

Ncra_arp-3      RQRHGPWFGGSLLGQTPEFRSYCHTKAEYQEYGPSIVRRFALLGGPGGS  439    Actin 
Asub_arp-3      RQRHGPWFGGSLLGQTPEFRSYCHTKAEYDEYGPSIVRRFALIGGPGST  428    Actin 
Anam_arp-3      RQRHGPWFGGSLLGQTPEFRSYCHTKAEYDEYGPSIVRRFALLGGPGST  428    Actin 
Apul_arp-3      RQRHGPWFGGSLLGQTPEFKSYCHTKAEYDEYGPSIVRRFALIGGPGSS  428    Actin 
Amel_arp-3      RQRHGPWFGGSLLGQTPEFRSYCHTKAEYDEYGPSIVRRFALLGGPGST  427    Actin 
                ********************:********* ************:****.

Input files: MFA/Ncra.CLOCK.v02.Aure.arp-3.aln (alignment), ALN//Ncra.CLOCK.v02.Aure.arp-3.dom.rgns (regions: exons, domains, low-complexity, etc)

5 sequences, alignment length = 520
sequence lengths:
  439  Ncra_arp-3
  428  Asub_arp-3
  428  Anam_arp-3
  428  Apul_arp-3
  427  Amel_arp-3

#domain Ncra_arp-3Asub_arp-3Anam_arp-3Apul_arp-3Amel_arp-3
1Actin1  1..430
1  1..419
1  1..419
1  1..419
1  1..418

ARC.colors file was not found, using default colors.

Alignment Regions Colorize, ARC v061