arp-3
Ncra_arp-3 MANTTPAVVMDNGTGFSKLGFAGNDSPSFVFPTAIATKSPSAGTGGSGSGRPAVANKPSFLTGGAGPGGHLSAKRGTEDLDYFIGDEAVAAANGPGYGLHYPIRHGQIENWDHMERFWSNSIFKYLRVEP 130 Actin
Asub_arp-3 MANQTPAVVMDNGTGYTKLGFAGNDSPSFVFPTAIATKGPTSGSAGR-SGRPGGGNNASMLSG----------KRGTEDLDYFIGDEALAASSGPGYGLHYPIRHGQVENWDQMERFWSNSIFKYLRVEP 119 Actin
Anam_arp-3 MANQTPAVVMDNGTGYTKLGFAGNDSPSFVFPTAIATKGPTDSSAGR-SGRPGGGNNASMLSG----------KRGTEDLDYFIGDEALAASSGPGYGLHYPIRHGQIENWDQMERFWSNSIFKYLRVEP 119 Actin
Apul_arp-3 MANQTPAVVMDNGTGYTKLGFAGNDSPSFVFPTAIATKGPTSGTVGR-SGRPGGGNNASMLSG----------KRGTEDLDYFIGDEALAASSGPGYGLHYPIRHGQVENWDQMERFWSNSIFKYLRVEP 119 Actin
Amel_arp-3 MANQTPAVVMDNGTGYTKLGFAGNDSPSFVFPTAIATKGPTDSSAGR-SGRPGG-NNSSMLSG----------KRGTEDLDYFIGDEALAASSGPGYGLHYPIRHGQIENWDQMERFWSNSIFKYLRVEP 118 Actin
*** ***********::*********************.*: .: * ****. *:.* *:* ***************:**:.**************:****:****** *********
Ncra_arp-3 EDHHFLLTEPPLNPPENRENTAEIFFESFNCAGLYIAVQAVLALAASWTSSKVQDRSLTGTVIDSGDGVTHVIPVAEGYVIGSSIKSIPIAGRDITYFVQSLLRDRGEPDSSLKTAQEIKEEYCYVCPDI 260 Actin
Asub_arp-3 EDHHFLLTEPPLNPPENREATAEIMFESFNVAGLYIAVQAVLALAASWTSSKVQDRSLTGTVIDSGEGVTHVIPVAEGYVIGSSIKSVPIAGRDITYFVQSLLRDRGEPDSSLKTAEKIKEEFCYVCPDI 249 Actin
Anam_arp-3 EDHHFLLTEPPLNPPENREATAEIMFESFNVAGLYIAVQAVLALAASWTSSKVQDRSLTGTVIDSGEGVTHVIPVAEGYVIGSSIKSVPIAGRDITYFVQSLLRDRGEPDSSLKTAEKIKEEFCYVCPDI 249 Actin
Apul_arp-3 EDHHFLLTEPPLNPPENREATAEIMFESFNVAGLYIAVQAVLALAASWTSSKVQDRSLTGTVIDSGEGVTHVIPVAEGYVIGSSIKSVPIAGRDITYFVQSLLRDRGEPDSSLKTAEKIKEEFCYVCPDI 249 Actin
Amel_arp-3 EDHHFLLTEPPLNPPENREATAEIMFESFNVAGLYIAVQAVLALAASWTSSKVQDRSLTGTVIDSGEGVTHVIPVAEGYVIGSSIKSVPIAGRDITYFVQSLLRDRGEPDSSLKTAEKIKEEFCYVCPDI 248 Actin
******************** ****:***** ****************** ****************:********************:********************* ******::****:******
Ncra_arp-3 VKEFAKYDRDRSRFLKHTITQPGGRQVTVDVGYERFMAPEIFFNPEIYSSDFLTPLPVVVDGVIQSSPIDVRRGLYKNIVLSGGSTLYKDFGRRLQRDIKQLVDTRIKASEVRSGGAKSGGLDVQVITHK 390 Actin
Asub_arp-3 VKEFARYDREPERFGKHTINYPNGRNAVVDVGYERFLAPEIFFNPEIYSSDFLTPLPNIVDTVIQQSPIDVRRGLYKNIVLSGGSTLYENFGRRLQRDIRHLVDARIQASEARSGGAKSGGLDVQVITHK 379 Actin
Anam_arp-3 VKEFARYDREPERFGKHTINYPNGRNAVVDVGYERFLAPEIFFNPEIYSSDFLTPLPNIVDTVIQQSPIDVRRGLYKNIVLSGGSTLYENFGRRLQRDIRHLVDARIQASEARSGGAKSGGLDVQVITHK 379 Actin
Apul_arp-3 VKEFARYDREPERFGKHTINYPNGRNAVVDVGYERFLAPEIFFNPEIYSSDFLTPLPNIVDTVIQQSPIDVRRGLYKNIVLSGGSTLYENFGRRLQRDIRHLVDARIQASEARSGGAKSGGLDVQVITHK 379 Actin
Amel_arp-3 VKEFARYDREPERFGKHTINYPNGRSAVVDVGYERFLAPEIFFNPEIYSSDFLTPLPNIVDTVIQQSPIDVRRGLYKNIVLSGGSTLYENFGRRLQRDIRHLVDARIQASEARSGGAKSGGLDVQVITHK 378 Actin
******:***: .** ****. *.**...********:** ***************** :** ***.**********************::********* :***:**:***.*****************
Ncra_arp-3 RQRHGPWFGGSLLGQTPEFRSYCHTKAEYQEYGPSIVRRFALLGGPGGS 439 Actin
Asub_arp-3 RQRHGPWFGGSLLGQTPEFRSYCHTKAEYDEYGPSIVRRFALIGGPGST 428 Actin
Anam_arp-3 RQRHGPWFGGSLLGQTPEFRSYCHTKAEYDEYGPSIVRRFALLGGPGST 428 Actin
Apul_arp-3 RQRHGPWFGGSLLGQTPEFKSYCHTKAEYDEYGPSIVRRFALIGGPGSS 428 Actin
Amel_arp-3 RQRHGPWFGGSLLGQTPEFRSYCHTKAEYDEYGPSIVRRFALLGGPGST 427 Actin
********************:********* ************:****.
Input files: MFA/Ncra.CLOCK.v02.Aure.arp-3.aln (alignment), ALN//Ncra.CLOCK.v02.Aure.arp-3.dom.rgns (regions: exons, domains, low-complexity, etc)
5 sequences, alignment length = 520
sequence lengths:
439 Ncra_arp-3
428 Asub_arp-3
428 Anam_arp-3
428 Apul_arp-3
427 Amel_arp-3
# | domain |
Ncra_arp-3 | Asub_arp-3 | Anam_arp-3 | Apul_arp-3 | Amel_arp-3 |
1 | Actin | 1 1..430
| 1 1..419
| 1 1..419
| 1 1..419
| 1 1..418
|
|
ARC.colors file was not found, using default colors.
Alignment Regions Colorize, ARC v061