al-2
Ncra_al-2 --------------------------------------------------------MYDYAFVHLKFTVPAAVLLTAIAYPILNRIHLIQTGFLVVVAFTAALPWDAYLIKHKVWSYPPEAIVGPRLLGI 74
Asub_al-2 MPTLPEAGLLLSQVTGRALAGLLLPQLRIPIPTRLSLSLCYGDEIARDLAIVSNTMGYDYALVHVKYTIPPAIALTLLYRPLLTRLDVYKIVFLITIAVVSTTPWDSYLIRTSIWSYPENAVIGPKLFDI 130
Anam_al-2 -------------------------------------------------------MGYDYALVHVKYTIPPAIALTILYRPLLTRLDVYKILFLVTIALVSTTPWDSYLIRTRIWSYPEDVVIGPKLFDI 75
Apul_al-2 -------------------------------------------------------MGYDYALVHVKYTIPPAIALTLLYRPLLTRLDVYKILFLITIAVVSTTPWDSYLIRTRIWSYPENAVIGPKVFDI 75
Amel_al-2 -------------------------------------------------------MGYDYALVHVKYTIPPAIALTLLYRPLLTRLDVYKILFLVTIALVTTTPWDSYLIRTRIWSYPEDAVIGLKLFDI 75
** *:**:*:*:*.*: ** : *:*.*:.: : **:.:*..:: ***:***: :**** .::* :::.
Ncra_al-2 PFEELFFFVIQTYITALVYILFNKPVLHALHLNNQQNPPAWMRVVKVTGQVVLVALSVWGWNAAQVHQETSYLGLILVWACPFLLAIWTLAGRFILSLPWYATVLPMFLPTFYLWAVDEFALHRGTWSIG 204
Asub_al-2 PLEEVFFFIVQTYNTSLLYLICSKLTFHPIYLRRQDKNDRWK-YMKLAGQLLLGLLLKKAITLIRAEGAGTYMGLILAWAVPFLLLLWSLAYQFILGLPLTNTLLPILLPTFYLWIVDTLALRRGTWVIE 259
Anam_al-2 PLEEVFFFIVQTYNTSLLYLLLSKPTFHPIYLRRQDKNDRWK-YFKLAGNLLLGLILKKAINLIRDEGAGTYMGLILVWAVPFLILLWSLAYQFILGLPVTNTLLPIALPTLYLWIVDTLALRRGTWVIE 204
Apul_al-2 PLEELFFFVIQTYNTSILYLLLSKPTFHPVYLRRQEKNDRWK-YMKLAGQLLLGLLMKKAITLIREEGAGTYMGLILAWAVPFLLLLWSLAYQFILGLPITNTLLPILLPTLYLWIVDTLALRRGTWVIE 204
Amel_al-2 PLEEVFFFIIQTYNTSLLYLLCSKPTFHPVYLRRQEKNDRWK-YIKLAGQLVLGLLLKKAMNLVKDEGAGTYMGLILAWAVPFLLLLWSLAYQFILGLPITNTLLPIALPTLYLWSVDTLALRRGTWVIE 204
**:**:***::*** *:::*:: .* .:*.::*..*:: * .*::* ::* : . . : . :*:****.** ***: :*:** :***.** *:**: * *:*** ** :**:**** *
Ncra_al-2 SGTKLDFCLFGKLDIEEATFFLVTNMLIVGGMAAFDQYLAVIYAFPTLFPKVNRYPTTHMLLQSRLINTSRYDLERIEGLREAVERLRLKSRSFYLANSLFSGRLRIDLILLYSFCRLADDLVDDAKSRR 334 SQS_PSY
Asub_al-2 SGTKLGTHLWPGLEIEEAVFFLLTNTLIVFGLVAFDNAVAILNAFPTHFPSVPALPSPALLVRALLLPAGAYDEDRIEGLAEAVNRLQRKSRSFYLASAAFSSRLRVDLIVLYSFCRVADDLVDNSASPL 389 SQS_PSY
Anam_al-2 AGTKLGTHLWPGLEIEEAVFFLLTNTLIVFGLVAFDNAVAILHAFPSHFPSVPALPSPALLVRALLLPAAAYDEDRIEGLSEAVERLHKKSRSFYLASAAFSSRLRLDLIVLYSFCRVADDLVDNAASPL 334 SQS_PSY
Apul_al-2 SGTKLGTHLWPGLEIEEAVFFLLTNTLIVFGLVAFDNAIAILNAFSTHFPSVPALPSPMLLVKALLLPAGAYDEDRIEGLAQAVDRLEKKSRSFFLASAAFSSRLRVDLIVLYSFCRVADDLVDNAASPL 334 SQS_PSY
Amel_al-2 SGTKLGTHLWPGLEIEEAVFFLLTNTLIVFGLVAFDNAVAILNAFPSHFPSVPALPSPPLLVQALLLPAGAYDEDRIEGLSEAVKRLHQKSRSFYLASAAFSSRLRVDLIVLYSFCRVADDLIDNAASGL 334 SQS_PSY
:****. *: *:****.***:** *** *:.***: : :: **.: **.* *:. :*::: *: :. ** :***** :**.**. *****:**.: **.***:***:******:****:*:: *
Ncra_al-2 EVLSWTAKLNHFLDLHYKDADATEDPKKKAERIDAYIKTAFPPCAYQALHLLPTHILPPKPLYDLIKGFEMDSQFTFHGTSDSTDLQYPIADDKDLENYAIYVAGTVGELCIALIIYHCLPDMSDTQKRE 464 SQS_PSY
Asub_al-2 EARKWIKRLRTFLDLSYKAKDPMAHDQN-VGAVVRHVVTEFPRNTHTALLQLPTSRLSSKHFYDLLKGFEMD--LGFQTSKGAKPSAFPIKSEYDLDTYSSRVAGTVAAMCIELVFFHYQGEISPGLQEQ 516 SQS_PSY
Anam_al-2 EARKYIKRLRTFLDLSYKAKDPMAHDQN-VGSVVRHVVTEFPRNTHTALLQLPTSRLSSKHLYDLLKGFEMD--LGFQTSKGALTSAFPIKSEYELDVYSSRVAGTVAAMCIELVFFHYPGEASSTLQEQ 461 SQS_PSY
Apul_al-2 EARKWIKHLRTFLDLSYKAKDPMAHDQN-VGSVVRHVVTEFPRNTHTALLQLPTGRLSSKNLYDLLKGFEMD--LGFQTSKGAKPSAFPIKSEYDLDIYSSRVAGTVAAMCIELVFFHYPDEVSKVQQEK 461 SQS_PSY
Amel_al-2 EARSWIKRLRTFLDLSYKVKDPMAHDQN-IGSIVRHVVTEFPRSTHTALLQLPTSRLSSKHLYELLKGFEMD--LGFQTSKGAQPSAFPIKSKHDLDTYSSRVAGTVAAMCIELIFFHYPGEVSPTLQEQ 461 SQS_PSY
*. .: :*. **** ** *. . :: : :: * ** :: ** *** *..* :*:*:****** : *: :..: :* .. :*: *: *****. :** *:::* : * :.
Ncra_al-2 LETAACRMGIALQYVNIARDIVVDARIGRVYLPTTWLKKEGLTHKMVLE--------------NPEGPEVIERMRRRLLENAFELYGGARPEMQRIPSEARGPMIGAVENYMAIGRVLRERKEGTVFVRM 580 SQS_PSY
Asub_al-2 VLDAGNTMGIALQYTNIARDIGTDALLQRVYLPTSWLKEENLTPEQAIQVFTILEAKATRGSEDQIFVKKLEKLRHRLLDRSFALYEDSRDAIDKLPSEVRGPMRVATESYMEIGRTLRQPG----YRVT 642 SQS_PSY
Anam_al-2 ILDAGNTMGIALQYTNIARDIGTDALIQRVYLPTSWLKEENLTPEQAIQ--------------DQIFVSKFERLRKRLLDRSFALYEDSRSAIDKLPSEVRGPMRVACESYMEIGRTLRQPG----YRVR 573 SQS_PSY
Apul_al-2 ILDAGNTMGIALQYTNIARDIGTDALLQRVYLPTNWLKEENLTPEQAIQVFTILDGKSTLGPEDQIFITKLERLRHRLLDRSFALYEDSRDAIDKLPSEVRGPMRVATESYMEIGRTLRQPG----YRVT 587 SQS_PSY
Amel_al-2 ILDAGNTMGIALQYTNIARDINTDALMQRVYLPTSWLKEENLTPEQAIQVFTIMDAKPVLGAEDQLFVSKLERLRNRLLERSFALYEDSRGAIDKLPSEVRGPMRVATESYMEIGRTLKRPG----YRGR 587 SQS_PSY
:: *. *******.**** * .** : ******.***:*.** : .:: : :*::*.*** .:* ** .:* ::::***.**** * *.** ***.*:. :
Ncra_al-2 EGRATVPKRRRLSTLLRALYEQ 602 SQS_PSY
Asub_al-2 KGKATVDGWRRLAVAWKALQ-- 662 SQS_PSY
Anam_al-2 KGEATVDGWRRLTVAWKALQ-- 593 SQS_PSY
Apul_al-2 KGKATVGGWRRLAVAWKALQ-- 607 SQS_PSY
Amel_al-2 KGKATVDGWRRLAVAWKALQ-- 607 SQS_PSY
:*.*** **:. :**
Input files: MFA/Ncra.CLOCK.v02.Aure.al-2.aln (alignment), ALN//Ncra.CLOCK.v02.Aure.al-2.dom.rgns (regions: exons, domains, low-complexity, etc)
5 sequences, alignment length = 780
sequence lengths:
602 Ncra_al-2
662 Asub_al-2
593 Anam_al-2
607 Apul_al-2
607 Amel_al-2
| # | domain |
Ncra_al-2 | Asub_al-2 | Anam_al-2 | Apul_al-2 | Amel_al-2 |
|---|
| 1 | SQS_PSY | 1 290..589
| 1 345..651
| 1 290..582
| 1 290..596
| 1 290..596
|
| |
ARC.colors file was not found, using default colors.
Alignment Regions Colorize, ARC v061