al-1

Ncra_al-1       MAETQRPRSAIIVGAGAGGIAVAARLAKAGVDVTVLEKNDFTGGRCSLIHTKAGYRFDQGPSLLLLPGLFRETFEDLGTTLEQEDVELLQCFPNYNIWFSDGKRFSPTTDNATMKVEIEKWEGPDGFRRY  130    Thi4  Pyr_redox_3  Pyr_redox_2  DAO 
Asub_al-1       MSGNTRQKTAIVVGAGAGGVSTAARLAKAGFEVTVLEKNDFTGGRCSLIH-KEGWRFDQGPSLLLLPRLFHKTFADLDTSLEAEGVHIVKCEPNYNMWFGDGEKFQLSTDLALMKEQVEKWEGKDGYSRY  129    Thi4  Pyr_redox_3  Pyr_redox_2  NAD_binding_9 
Anam_al-1       -------------GAGAGGVATAARLAKAGFKVTVLEKNDFTGGRCSLLH-HEGWRFDQGPSLLLLPRMFHKTFADLDTTLEAEGVHIVKCEPNYNMWFGDGEKFQLSTDLVLMKEQVEKWEGKDGYSRY  116    Pyr_redox_3  Pyr_redox_2  DAO 
Apul_al-1       --------MHATTGAGAGGVSTAARLAKAGFKVTVLEKNDFTGGRCSLLH-HEGWRFDQGPSLLLLPRLFHKTFADLDTTLEAEGVHIVKCEPNYNMWFGDGEKFQLSTDLALMKEQVEKWEGKDGYSRY  121    Thi4  Pyr_redox_3  Pyr_redox_2  DAO 
Amel_al-1       MGGATNQKTAIVVGAGAGGVSTAARLAKAGFKVTVLEKNDFTGGRCSLLH-HEGWRFDQGPSLLLLPRLFHKTFADLDTSLEAEGVHIVKCEPNYNMWFGDGEKFQLSTDLVLMKEQIEKWEGKDGYSRY  129    Thi4  Pyr_redox_3  Pyr_redox_2  NAD_binding_9 
                              ******::.********..****************:* : *:**** ******* :*::** **.*:** *.*.:::* ****:**.**::*. :** . ** ::* *** **: *

Ncra_al-1       LSWLAEGHQHYETSLRHVLHRNFKSILELADPRLVVTLLMALHPFESIWHRAGRYFKTDRMQRVFTFATMYMGMSPFDAPATYSLLQYSELAEGIWYPRGGFHKVLDALVKIGERMGVKYRLNTGVSQVL  260    DAO  FAD_binding_2  Pyr_redox_3 
Asub_al-1       LSFLREAHSHYELSVEHVLSRNFTSITSMLRPSFLS-RVFELHPFESIYSRASKYFWTERLRRVFTFASMYMGMSPFDAPGTYSLLQYTELTEGIWYPVGGFHKVIDALVKVGERLGVKYRLSTPISKIT  258    NAD_binding_9  Amino_oxidase  DAO  Pyr_redox_3 
Anam_al-1       LSFLREAHNHYELSVEHVLSRNFTSITSMLRPSFLS-RVFELHPFESIYSRASKYFWTERLRRVFTFASMYMGMSPFDAPGTYSLLQYTELTEGIWYPVGGFHKVIEALVKVGERLGVTYRLSTPISQIT  245    DAO  Amino_oxidase  Pyr_redox_3 
Apul_al-1       LSFLKEAHSHYELSVEHVLSRNFTSITSMLRPSFLG-RVFELHPFESIYSRASKYFWTERLRRVFTFASMYMGMSPFDAPGTYSLLQYTELTEGIWYPVGGFHKVIDALVKIGERFGVTYRLSTPISKIT  250    DAO  Amino_oxidase  Pyr_redox_3 
Amel_al-1       LNFLREAHNHYELSVEHVLSRNFTSITSMLRPSFLG-RVFELHPFESIYGRASKYFWTERLRRVFTFASMYMGMSPFDAPGTYSLLQYTELTEGIWYPIGGFHKVVEALVKVGERLGVTYRLSTPISKIT  258    NAD_binding_9  FAD_binding_3  Amino_oxidase  DAO  Pyr_redox_3 
                **.:* *.*.*** *:.*** ***.** .:  * ::   :: *******: **.:** *:*::******:***********.*******:**:****** ******::** *:***:**.***.* :*::

Ncra_al-1       TDGGKNGKKPKATGVQLENGEVLNADLVVVNADLVYTYNNLLPKEIGGIKKYANKLNNRKASCSSISFYWSLSGMAKELETHNIFLAEEYKESFDAIFERQALPDDPSFYIHVPSRVDPSAAPPDRDAVI  390    Pyr_redox_3 
Asub_al-1       LS--PDGRR--ATGVVLANGETLSADVVVNNTDLVYAYNNFLPPTP-----YAESLANRETSCSSISFYWALDRKLPELNAHNIFLADEYKESFDSIFKKHLIPNEPSFYVNIPSRPDPTAAPEGKESVV  379    Pyr_redox_3  Amino_oxidase 
Anam_al-1       LS--PDGRR--ATGVVLANGETLTADVVVNNTDLVYAYNNFLPPTP-----YAESLANRETSCSSISFYWALDRKLPELNAHNIFLADEYKESFDSIFKKNLIPNEPSFYVNIPSRPDPTAAPEGKEAVV  366    Pyr_redox_3  Amino_oxidase 
Apul_al-1       LS--PDGRR--ATGVVLANGETLSADVVVNNTDLVYAYNNFLPPTP-----YAESLANRETSCSSISFYWALDRKIPELNAHNIFLADEYKESFDSIFKKNLIPNEPSFYVNIPSRPDPTAAPEGKESVV  371    Pyr_redox_3  Amino_oxidase 
Amel_al-1       LS--PDGRR--ATGVVLANGETLTADVVVNNTDLVYAYNNFLPPTP-----YAESLANRETSCSSISFYWALDRKLPELNAHNIFLADEYKESFDSIFKKNLIPNEPSFYVNIPSRPDPTAAPEGKETLV  379    Pyr_redox_3  FAD_binding_2  Amino_oxidase 
                  .   :*::  **** * ***.*.**:** *:****:** :**        **:.* **::*********:*.    **::******:*******:**: : :*::****:::*** **:*** .::::

Ncra_al-1       ALVPVGHLLQNGQ----------------------------------PELDWPTLVSKARAGVLATIQARTGLSLSPLITEEIVNTPYTWETKFNLSKGAILGLAHDFFNVLAFRPRTKAQG--------  478    DAO  FAD_oxidored 
Asub_al-1       VLVPVGHLLKEHENPSPATTAKGKDIQQSDANERMTGSDSVQGIKPSEAQDWPKMIALARKTILTTIAKRTGVDIEPLIVHEITNDPVTWRESFNLDRGAILGLSHSFFNVLSFRPATRARRGGWLDGRF  509    Amino_oxidase  DAO 
Anam_al-1       VLVPVGHLLGEHENPKSAATATAKDIRQSDADGKMTNSTSAEGIKPSETQDWPKMIELARKTILTTIAKRTGVDIEPLIVHEITNDPITWRESFNLDRGAILGLSHSFFNVLSFRPATRARRGGWFDGRL  496    Amino_oxidase  DAO 
Apul_al-1       VLVPVGHLLGENENPTNVSTATTGEIQQGNSGEKLTSSKSAQGVKPSETQDWPKMIELARKTILATIAKRTGVDITPFIVHEIANDPMTWRESFNLDRGAILGLSHSFFNVLSFRPSTRARRGGWLDGRL  501    Amino_oxidase  Pyr_redox_3  DAO  FAD_binding_2 
Amel_al-1       VLVPVGHLLGEHEKITNATTATDKEIQQSNANGKMANSKSAQGIKPAETQDWPKMIELARKTILSTIAKRTGVDIAPLIVHEITNDPITWRETFNLDRGAILGLSHSFFNVLSFRPATRARRGGWLDGRF  509    Amino_oxidase  Pyr_redox_3  DAO 
                :.******** : :                                     ***.::  **  :*:**  ***:.: *:*..**.* * * . .***.:******:*.*****:*** *:*:        

Ncra_al-1       -----------------MDNAYFVGASTHPGTGVPIVLAGAKITAEQILEETFPKNTKVPWTTNEERNSERMRKEMDEKITEEGIIMRSNSSKPGRRGSDAFEGAMEVVNLLSQRAFPLLVALMGVLYFL  591    FAD_oxidored  Pyr_redox 
Asub_al-1       GGGVAGRIGELLFSGGSIERLYMVGASAHPGTGVPIVLAGGRLVAEQICQDLG---VNIPWQSG--------------------------SPEAQRTGALDQVQNSLVPEWILYLLLALLVLVLGIFLGK  610    DAO 
Anam_al-1       GG-------------GSIERLYMVGASAHPGTGVPIVLAGGRLVAEQVCQDLG---VKIPW---------------------------------------------------------------------  541    DAO  Amino_oxidase 
Apul_al-1       GS---------------IERLYMVGASAHPGTGVPIVLAGGRLVAEQICQDFG---MNIPWPTG--------------------------SQEKQRTGALDQVQNSFAIEWVVYMLLAFLVLALGMFLGK  587    FAD_binding_2  Amino_oxidase 
Amel_al-1       GGGILGRIGELLFSGGSIERLYMVGASAHPGTGVPIVLAGGRLVAEQVCQDLG---VEIPWQTG--------------------------PSKIERTGILDQVQTTLTLEWIVYMLFALLILALGISLGK  610    DAO  Pyr_redox 
                                  ::  *:****:************.::.***: ::      ::**                                                                    

Ncra_al-1       LFVR  595   
Asub_al-1       QS--  612   
Anam_al-1       ----  541   
Apul_al-1       QT--  589   
Amel_al-1       QS--  612   
                    

Input files: MFA/Ncra.CLOCK.v02.Aure.al-1.aln (alignment), ALN//Ncra.CLOCK.v02.Aure.al-1.dom.rgns (regions: exons, domains, low-complexity, etc)

5 sequences, alignment length = 780
sequence lengths:
  595  Ncra_al-1
  612  Asub_al-1
  541  Anam_al-1
  589  Apul_al-1
  612  Amel_al-1

#domain Ncra_al-1Asub_al-1Anam_al-1Apul_al-1Amel_al-1
1Amino_oxidase1  16..306
2  462..509
1  16..392
1  3..376
2  470..531
1  8..382
2  475..534
1  16..412
2ApbA1  9..45
0000
3DAO1  8..301
2  414..507
1  8..141
2  177..289
3  445..555
1  0..137
2  156..275
3  396..529
1  4..141
2  166..280
3  391..532
1  8..147
2  184..288
3  446..555
4FAD_binding_21  8..52
2  177..294
1  8..53
2  189..314
1  0..40
2  172..301
1  4..45
2  200..305
3  488..533
1  8..53
2  190..314
5FAD_binding_31  7..51
1  6..49
001  6..49
2  106..167
6FAD_oxidored1  9..120
2  209..290
3  433..551
1  9..56
2  203..287
1  0..44
2  186..274
1  3..49
2  189..279
1  9..58
2  202..287
7HI0933_like1  7..49
2  211..291
1  7..47
2  210..285
1  0..34
2  197..272
1  2..39
2  202..277
1  7..47
2  211..285
8NAD_binding_81  11..76
1  11..76
1  0..63
1  4..68
1  11..76
9NAD_binding_91  10..51
2  254..289
1  10..146
2  233..285
001  10..148
2  230..285
10Pyr_redox1  8..44
2  232..279
3  491..529
4  522..560
1  8..44
2  230..273
001  8..44
2  230..273
3  547..587
11Pyr_redox_21  8..120
2  225..289
1  8..118
1  0..105
1  3..110
1  8..116
12Pyr_redox_31  10..73
2  179..317
1  10..72
2  184..314
1  0..64
2  171..301
1  3..67
2  178..305
3  373..482
1  10..69
2  186..313
3  391..490
13Thi41  4..48
1  3..49
01  2..40
1  4..48

ARC.colors file was not found, using default colors.

Alignment Regions Colorize, ARC v061