ace-4

Ncra_ace-4      -MIVPVLSR-------QALR-HASVARVALP-SLTRWYAS--YPPHTVVKMPALSPTMTSGGIGAWQKKPGDKIEPGEVLVEIETDKAQMDFEFQEEGVLAKILKDSGEKDVAVGNPIAILVEEGTDVNA  118    Biotin_lipoyl 
Asub_ace-4      MSAAALLARASGRLCLQSLRARESVATPATFGALSRYYASKSFPPHTVITMPALSPTMTAGNIGTWQKKAGDALAPGDVLVEIETDKAQMDFEFQEEGVLIKVLKDSGAKDVAVGNPIAVMAEEGTDVSA  130    Biotin_lipoyl 
Anam_ace-4      MSAAALLSRASGRLCLQSLRARESVATPAVFGALSRYYASKSFPPHTIITMPALSPTMTAGNIGTWQKKAGDALAPGDVLVEIETDKAQMDFEFQEEGVLIKVLKDSGAKDVAVGNPIAVMAEEGTDVSA  130    Biotin_lipoyl 
Apul_ace-4      MSAAALLARASGRVCLQSLRARESVATPAMFGALSRYYASKSFPPHTVITMPALSPTMTAGNIGTWQKKAGDALAPGDVLVEIETDKAQMDFEFQEEGVLIKVLKDSGAKDVAVGNPIAVMAEEGTDVSA  130    Biotin_lipoyl 
Amel_ace-4      MSAAALLARASGRLCLQSLRARESVATPALFGALSRYYASKSFPPHTIISMPALSPTMTAGNIGAWQKKAGDALAPGDVLVEIETDKAQMDFEFQEEGVLVKVLKDSGAKDVAVGNPIAVMAEEGTDVSA  130    Biotin_lipoyl 
                    ..:*:*       *:** : ***  *   :*:*:***  :****::.********* *.**:****.** : **:********************** *:***** ********** :.******.

Ncra_ace-4      FKDFTLKDAGGETSP-------AVPKDEPKNESTASAPTPAP---TPAPEPENTSFTG-RFQTALEREPNALPAAKRLAREKGIDLRNVKGSGPGGKITEEDVKKALASAPAAGAAAA----AYTDVPIS  233    E3_binding  2-oxoacid_dh 
Asub_ace-4      FDDFTVEDAGGQKEAKEGSGQEALDASEPPSNSSSTAPAPAPAQSTPAPQPEESESSGERLQTALQRAPKLSPAAQKLALEKGVAINKVKGSGPGGRVTKEDIEKFKPAATASAAPAG--LPTYEDVPAS  258    E3_binding  2-oxoacid_dh 
Anam_ace-4      FDSFTVEDAGGEKQAKEGSGQEAANASEPPSNSSSTAPAPAPTQSSSAPQAQESESSGERLQTALERQPKLSPAAQKLALEKGVAISQVKGTGPGGRVTKEDIEKFKPAATAAAAPAGAAAAAYEDVPAS  260    E3_binding  2-oxoacid_dh 
Apul_ace-4      FDDFTVEDAGGESKAKEGSGQEAANASEPPSNSSKTAPAPA--ESSPAPQAQETESSGERLQTALQRQPKLSPAAQKLALEKGVAISQVKGTGRGGVITKEDIEKFKPAGPAAAAPAG--LPTYEDVPAS  256    E3_binding  2-oxoacid_dh 
Amel_ace-4      FESFTIEDAGGQKEAKEGSGQEAANASEPPSNSSGTAPAPA--QSSPAPQAQESESTGERLQTALERQPKLSPAAQKLALEKGVAISQVKGTGPGGRITKEDIEKFKPAATAAAAPAG--VASYEDVPAS  256    E3_binding  2-oxoacid_dh 
                **..**::****:...       *   .** .:*: :**:**    :.** .:::. :* *:****:* *:  ***::** ***: : :***:* ** :*:**::*  .: .*:.*.*.    :* *** 

Ncra_ace-4      GMRKTIAARLKESVTENPHFFVSTNLSVSKLLKLRQALNSSADGRYKLSVNDFLIKAMGIASKRVPTVNSSWRDG----VIRQFETVDVSVAVATPNGLITPIVKGVEGKGLESISAAVKELAKKARDGK  359    2-oxoacid_dh  DUF3614 
Asub_ace-4      SMRKTIAARLTQSMNENPHYFVASSISVSKLMKLRQALNSAADAKYKLSVNDFLVKALAAAARKVPAANSSWREENGNVFVRQHNTVDVSVAVATPVGLMTPIVKNVNGTGLESISSQIKELGKRARDGK  388    2-oxoacid_dh  E3_binding 
Anam_ace-4      SMRKTIASRLVQSMNENPHYFVASSISVSKLMKLRVALNSAADGKYKLSVNDFLIKALAVAARKVPAANSSWREENGNVFIRQNNTVDVSVAVATPVGLMTPIVKNVNGTGLESISSQVKALGKSARDGK  390    2-oxoacid_dh  Biotin_lipoyl  E3_binding 
Apul_ace-4      SMRKTIAARLTQSMNENPHYFVASSISVSKLMKLRQALNSAADAKYKLSVNDFLVKALAAAARKVPAANSSWREENGNVFVRQHNTVDVSVAVATPVGLMTPIVKNVNGTGLESISSQIKELGKRARDGK  386    2-oxoacid_dh  E3_binding 
Amel_ace-4      SMRKTIAARLTQSMNENPHYFVASSISVSKLMKLRQALNSAADAKYKLSVNDFLVKALAAAARKVPAANSSWREENGNVFIRQHNTVDVSVAVATPVGLMTPIVKNVNGTGLESISSQIKELGKRARDGK  386    2-oxoacid_dh  E3_binding 
                *.******:** :*:.****:**::.:*****:*** *** :**.:*********:**:. *:::**:.*****:     .:** :*********** ** *****.*:*.******: :* *.* ****

Ncra_ace-4      LKPEEYQGGSISISNMGMNPAVQSFTAIINPPQAAILAVGAPQKVAVPVENEDGTTGVSWDEQIIVTASFDHKVVDGAVGAEWIRELKKVIENPLELLL  458    DUF3614  2-oxoacid_dh 
Asub_ace-4      LKPEEYQGGTITISNMGMNAAIDRFTAVINPPQACIIAVGAVKKVAVPSENED---GIEWDEQIVITGSFDHKVVDGAVGGEFMKELKAAIENPLSLML  484    2-oxoacid_dh  Biotin_lipoyl 
Anam_ace-4      LKPEQYQGGTITISNMGMNAAIDRFTAVINPPQACIIAVGAVKKVAIPSESED---GIEWDDQIVITGSFDHKVVDGAVGGEFMKELKAAIENPLNLML  486    2-oxoacid_dh 
Apul_ace-4      LKPEEYQGGTITISNMGMNAAIDRFTAVINPPQACIIAVGAVKKVAVPSENED---GIEWDEQIVITGSFDHKVVDGAVGGEFMKELKAAIENPLSLML  482    2-oxoacid_dh  Biotin_lipoyl 
Amel_ace-4      LKPEEYQGGTITISNMGMNAAIDRFTAVINPPQACIIAVGAVKKVAIPSENED---GIEWDEQIVITGSFDHKVVDGAVGGEFMKELKAAIENPLSLML  482    2-oxoacid_dh 
                *****:****:*:*******.*:: ***:* ****.*:**** :***:* *.**   *:.**:**::*.************.*:::***  *****.*:

Input files: MFA/Ncra.CLOCK.v02.Aure.ace-4.aln (alignment), ALN//Ncra.CLOCK.v02.Aure.ace-4.dom.rgns (regions: exons, domains, low-complexity, etc)

5 sequences, alignment length = 520
sequence lengths:
  458  Ncra_ace-4
  484  Asub_ace-4
  486  Anam_ace-4
  482  Apul_ace-4
  482  Amel_ace-4

#domain Ncra_ace-4Asub_ace-4Anam_ace-4Apul_ace-4Amel_ace-4
12-oxoacid_dh1  223..457
1  248..483
1  250..485
1  246..481
1  246..481
2Biotin_lipoyl1  34..108
1  46..120
2  426..449
1  46..120
2  284..307
1  46..120
2  424..447
1  46..120
3DUF36141  282..379
0000
4E3_binding1  173..211
1  196..234
2  361..368
1  196..234
2  363..370
1  194..232
2  359..366
1  194..232
2  359..366

ARC.colors file was not found, using default colors.

Alignment Regions Colorize, ARC v061