NCU00050

Ncra_NCU00050      MASLTAACRISARMAGRSVRG-FRTSAAALAAQNFTMPALSPTMTEGNIATWRVKEGDKFSAGDVLLEIETDKATMDVEAQDDGVMVKIMKNDGAKGVAVGARIAVIAEEGDDISSLEIPADAAPQSKPA  129    Biotin_lipoyl  Biotin_lipoyl_2  HlyD 
Asub_NCU00050      MVAFASSCRFAAAVVSRHGRRPFSVAAANRAAQNFTMPALSPTMTEGNITSWKLKEGDSFSAGDVILEIETDKAQMDVEAQEDGVLAKITVAEGSKAIQVGSRIAVLAEEGDDLASLEIPAEDSASSSSQ  130    Biotin_lipoyl  Biotin_lipoyl_2 
Anam_NCU00050      MVAFASSCRFAAAVVGRHGRRPFSVAVANRAAQNFAMPALSPTMTEGNITSWKLKEGDSFSAGDVILEIETDKAQMDVEAQEDGILAKIVVAEGAKAVQVGSRIAVLAEEGDDLASLEIPAEESSSSAG-  129    Biotin_lipoyl  Biotin_lipoyl_2 
Apul_NCU00050      MAAFASSCRFAAAVVSRHGRRPFSVAAANRAAQNFAMPALSPTMTEGNITSWKLKEGDSFSAGDVILEIETDKAQMDVEAQEDGILAKITVQEGAKAIQVGSRIAVLAEEGDDLANLKIPDED-ASSTGQ  129    Biotin_lipoyl  Biotin_lipoyl_2 
Amel_NCU00050      MVAFASSCRFAAVVVGRHGRRPFSVAAANRAAQNFAMPALSPTMTEGNITSWKLKEGDSFSAGDVLLEIETDKAQMDVEAQDDGVLAKIVVAEGAKAVQVGSRIAVLAEEGDDLATLEIPADESSSSAG-  129    Biotin_lipoyl  Biotin_lipoyl_2  HlyD 
                    *.:::::**::* :..*  *  * .:.*  *****:*************::*::****. *****:******** ******:**::.**   :*:*.: **:****:******::.*:*  :  ..*  

Ncra_NCU00050      ESAPSAPPPPTTADQSNVAVPESAPQNASSKSAPKP--------------------------PKRQYPHYPSVAHLLKVNGIDAAAVKDITPTGPGGRLLKGDVLAYLGKINAQTPSTVSERFEKQSHLD  233    HlyD  FAM222A  KIAA1328 
Asub_NCU00050      QPARKDRPSPQEELKSGIDPTESSPSAAEAPPSSKANADAEAGGAADTTRATQLQGSSDAKARKQTYPLYPSVQHLLLQNGLTKDDAHKIPSSGPAGRLLKGDVLAYLGKIEKNYPGQQAKRMDKLAHLD  260    E3_binding  Biotin_lipoyl_2 
Anam_NCU00050      QPARKDRPSPQEELKSGIDTTESSPSAAEAPPSSKPNADASAGGAADTTRATQLHGSSDAKARKQTYPLYPSVQHLLLQNGLTKEDANKIPASGPAGRLLKGDVLAYLGKIEKNYPGQQAKRMDKLAHLD  259    E3_binding  Biotin_lipoyl_2 
Apul_NCU00050      QPARKDRPSPQEELKSGIDTTESSPSASEAPPSSKPNADAEAGGAADTTRATQLQGSSDAKAKKQTYPLYPSVQHLLLQNGLTKEDANKIPASGPAGRLLKGDVLAYLGKIEKNYPGQQAKRMDKLAHLD  259    E3_binding  Biotin_lipoyl_2 
Amel_NCU00050      QPARKDRPSPQEDLKSGIDTTESSPSAAEAPPSSKPNADASAGGAADTTRATQLHGSSDAKPRKQTYPLYPSVQHLLLQNGLTKEDANKIPASGPAGRLLKGDVLAYLGKIEKNYPGQQAKRMDKLAHLD  259    HlyD  E3_binding  Biotin_lipoyl_2 
                    :.* .  *.*    :*.:  .**:*. :.: .:.*.                           *: ** **** ***  **:    .:.*..:**.************* *: : *.  ::*::* :**

Ncra_NCU00050      LSNIKVAKSTEAVKATTEKAQSKKLDAPAPPPVAVVTAPISLSAAIDVQNKLHKTIGVFLPLSTFITRATEIANQKLPLPANYQPTADELFNQVLGLDKVTRKESRGSYTPTFG-----SFVAPQRAARK  358    KIAA1328  FAM222A 
Asub_NCU00050      LSNIQLAAPPKKAETKPVEAEK-----PAPIPDTEIALPISLSAVLETQKRVYDTLGINLPLSTFIARASELANENLPLSKNRKPTADELFNSVLGLDKVSSKTSRGHYVPQVTGLPVTPLHTSQRAAKK  385    Biotin_lipoyl_2 
Anam_NCU00050      LSNIQLAAPPKKAETKPIEAEK-----PAPIPDTEIALPISLSAVLQTQQRVHETLGINLPLSTFIARASELANENLPLSKNRKPTADELFNSVLGLDKISSKTSRGHYVPQITGLPVAPVLTSQRAAKK  384    Biotin_lipoyl_2 
Apul_NCU00050      LSNIQLAAPPKKAESKPVEAEK-----PAPIPDIEIALPISLSAVLETQKRVHDTLGINLPLSTFIARASELANENLPLSKNRKPTADELFNSVLGLDKVSTKTARGNYIPQVTGLPSTPLVPSQRASKK  384    Biotin_lipoyl_2 
Amel_NCU00050      LSNIQLAAPPKKPEAKPVEAEK-----PAPIPDTEIALPISLSAVLETQKRVHETLGINLPLSTFIARASELANENLPLSKNRKPTADELFNSVLGLDKVSPKTSRGNYVPQVTGLPAAPLYTSQRAAKK  384    Biotin_lipoyl_2  E3_binding 
                   *****::* ..:  ::.. :*:.     *** *   :: * ****.::.*::::.*:*: *******:**:*:**::***. * :********.****** : * :** * * .      .. ..***::

Ncra_NCU00050      ADIIDILAAPSTRVAASAQSKSAAPGLTTSGPNVFSLQVPKSEEKRAQAFLQKMKLVLEQEPDKLVRA  426    KIAA1328 
Asub_NCU00050      ADIFDILSGKASSPKKAPKMFGAQG--TVA-QNVFSVSAPKGDEKRAQEYLERMKQVLEAEPGRLVL-  449   
Anam_NCU00050      ADIFDILVGKPSAPKKAPKTLAAQS--AAAAQNVFSVSAPKGDEKRAQEYLERMKQVLEAEPGRLVL-  449   
Apul_NCU00050      ADIFDILAGKPSGPKKAPKIFGAQG--VVAAQNVFSVSAPKGDEKRAQEYLERMKQVLEAEPGRLVL-  449   
Amel_NCU00050      ADIIDILAGKPSGPKKAPKIFGAQG--VVAAQNVFSVSAPKGDEKRAQEYLERMKQVLEAEPGRLVL-  449    E3_binding 
                   ****:*** . .:    :.:  .*    ..   ****:..**.:***** :*::** *** **.:** 

Input files: MFA/Ncra.CLOCK.v02.Aure.NCU00050.aln (alignment), ALN//Ncra.CLOCK.v02.Aure.NCU00050.dom.rgns (regions: exons, domains, low-complexity, etc)

5 sequences, alignment length = 520
sequence lengths:
  426  Ncra_NCU00050
  449  Asub_NCU00050
  449  Anam_NCU00050
  449  Apul_NCU00050
  449  Amel_NCU00050

#domain Ncra_NCU00050Asub_NCU00050Anam_NCU00050Apul_NCU00050Amel_NCU00050
1Biotin_lipoyl1  31..105
1  32..106
1  32..106
1  32..106
1  32..106
2Biotin_lipoyl_21  38..90
2  201..217
1  39..81
2  74..115
3  230..267
1  39..81
2  74..116
3  229..266
1  39..81
2  74..116
3  229..266
1  39..81
2  74..117
3  229..265
3E3_binding1  169..208
2  227..237
3  362..390
1  197..235
1  196..234
1  196..234
1  196..234
2  381..398
4FAM222A1  118..291
0000
5HlyD1  41..131
0001  42..158
6KIAA13281  212..264
2  350..423
0000

ARC.colors file was not found, using default colors.

Alignment Regions Colorize, ARC v061